Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 3.4e-206 721.5 370 100.0
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 7.2e-124 448.0 328 69.8
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 2.3e-122 443.0 328 69.8
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 5.7e-121 438.3 316 71.2
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 7.4e-121 438.0 317 70.3
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.2e-115 420.6 329 66.0
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 3.6e-115 419.1 328 65.5
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.3e-114 416.4 330 65.5
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.9e-114 415.6 325 64.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 6.7e-114 414.8 328 66.2
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.2e-112 409.8 328 66.2
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 4.8e-112 408.7 328 64.6
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 6.3e-112 408.3 328 62.8
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 6.3e-112 408.3 328 64.3
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 8.2e-112 407.9 328 64.0
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.8e-111 406.8 323 65.0
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.1e-111 405.6 322 64.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.2e-110 404.1 328 63.4
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.6e-110 402.9 328 64.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 7.7e-110 401.4 328 64.3
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 7.7e-110 401.4 328 63.1
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.3e-109 400.6 328 62.8
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.7e-109 400.2 328 63.1
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 3.8e-109 399.1 317 65.0
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.8e-109 399.1 328 63.7
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 6.5e-109 398.3 333 63.7
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 4.2e-108 395.6 327 64.2
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 4.2e-108 395.6 328 61.6
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 4.2e-108 395.6 328 63.7
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 5.5e-108 395.2 326 63.2
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.2e-107 394.0 329 64.1
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.2e-107 394.0 313 64.9
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.2e-107 394.0 328 63.4
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.6e-107 393.7 314 64.3
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.6e-107 393.7 329 63.2
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.1e-107 393.3 326 61.0
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 2.1e-107 393.3 367 57.2
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 4.7e-107 392.1 328 62.2
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.0e-106 391.0 329 61.1
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 3.0e-106 389.4 307 64.8
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 4.0e-106 389.0 328 62.8
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.2e-105 387.5 313 65.2
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.5e-105 387.1 328 61.3
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.5e-105 387.1 335 62.4
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.5e-105 387.1 326 62.3
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 5.7e-105 385.2 325 62.5
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 5.7e-105 385.2 315 64.8
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 9.8e-105 384.4 326 62.9
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 9.8e-105 384.4 315 62.5
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 9.8e-105 384.4 313 62.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.8e-104 382.9 322 60.9
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.8e-104 382.9 322 60.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.8e-104 382.9 328 60.4
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 4.8e-104 382.1 328 61.6
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 2.4e-103 379.8 322 61.8
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 7.0e-103 378.3 328 60.4
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 3.5e-102 375.9 320 60.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 5.9e-102 375.2 341 59.8
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 7.7e-102 374.8 326 61.3
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 8.5e-101 371.3 329 59.6
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.1e-100 370.9 346 57.5
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 7.2e-100 368.2 329 61.1
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.0e-98 364.4 302 62.9
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 2.3e-98 363.2 305 61.3
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 3.0e-98 362.8 370 56.8
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 3.0e-98 362.8 325 60.9
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.2e-97 360.9 345 55.7
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.6e-97 359.8 325 60.9
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 5.7e-97 358.6 329 59.0
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.7e-97 358.6 331 58.0
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 7.5e-97 358.2 321 58.6
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.3e-96 357.5 336 56.8
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 3.1e-95 352.8 296 60.8
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 2.0e-94 350.1 313 58.8
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.5e-94 349.4 308 59.1
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.0e-93 347.8 307 61.2
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-93 346.7 305 61.3
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 2.5e-92 343.2 308 58.4
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.2e-92 342.4 299 60.5
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.6e-91 340.5 314 57.6
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.6e-91 340.5 307 58.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.6e-91 339.3 304 58.6
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 4.7e-91 339.0 306 57.5
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.1e-91 338.6 300 59.3
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 6.1e-91 338.6 323 55.7
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 8.0e-91 338.2 295 58.3
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.0e-90 337.8 332 55.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.0e-90 337.8 308 57.8
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.4e-90 337.4 308 57.5
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 5.2e-90 335.5 311 57.2
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.8e-90 335.1 326 56.4
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.2e-89 334.3 308 56.8
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.4e-87 326.6 346 52.3
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 4.6e-86 322.4 308 55.8
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.0e-81 307.0 307 52.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 3.4e-81 306.2 274 58.4
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 6.4e-80 302.0 333 54.4
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.3e-80 301.6 380 46.1
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.0e-77 294.7 346 49.7
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.3e-76 289.7 350 50.3
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 5.6e-76 288.9 333 48.0
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.3e-72 277.7 318 50.3
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.7e-69 267.3 249 56.6
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 6.8e-66 255.4 303 47.5
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.2e-64 250.4 228 60.1
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.7e-61 240.7 228 57.5
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.3e-61 240.4 226 58.4
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.9e-60 237.3 341 45.2
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.5e-57 227.6 231 56.7
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.1e-54 217.2 200 61.5
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.0e-53 214.9 154 66.2
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.9e-53 213.0 351 39.3
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.5e-41 174.5 206 51.5
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 3.1e-34 150.2 123 64.2
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.1e-28 131.7 300 33.0
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.7e-27 126.7 98 60.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 4.1e-26 123.2 162 42.6
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 4.5e-25 119.8 340 29.4
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.0e-24 118.6 80 67.5
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.0e-24 118.6 80 67.5
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 1.4e-23 114.8 343 28.6
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.7e-19 100.1 177 41.8
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 5.3e-18 96.3 74 60.8
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.5e-15 87.4 84 59.5
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.2e-15 87.0 92 52.2
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 2.1e-14 84.3 83 50.6
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 7.9e-14 82.4 48 72.9
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 4.3e-12 76.6 302 24.5
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 2.2e-08 64.3 82 51.2
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.9e-08 63.9 79 51.9
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 5.0e-08 63.2 82 50.0
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 5.0e-08 63.2 82 50.0
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.1e-07 62.0 64 46.9


User provided reference genes

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