Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 9.2e-262 906.4 459 100.0
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.4e-217 759.6 544 74.3
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 4.9e-215 751.1 483 80.5
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.5e-211 739.6 457 83.4
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 6.2e-210 734.2 484 79.5
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.3e-204 716.5 484 78.1
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.8e-204 716.1 484 77.9
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.3e-204 715.7 484 77.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.3e-204 715.7 484 77.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.3e-204 715.7 484 77.7
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.0e-204 715.3 484 77.5
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 8.7e-204 713.8 484 77.1
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.1e-203 713.4 484 77.3
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-203 713.4 484 77.5
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-203 713.4 484 77.5
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.5e-203 713.0 483 77.4
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.5e-203 713.0 484 77.3
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.5e-203 713.0 484 77.5
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.5e-203 712.2 484 77.5
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.5e-203 712.2 484 77.3
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 3.3e-203 711.8 484 77.7
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 3.3e-203 711.8 484 77.7
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.3e-203 711.8 484 77.7
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.3e-203 711.4 484 77.5
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 5.6e-203 711.1 484 77.1
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 5.6e-203 711.1 484 76.9
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 5.6e-203 711.1 484 76.9
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.6e-203 710.3 484 77.5
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.6e-203 710.3 484 77.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 9.6e-203 710.3 484 76.9
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 9.6e-203 710.3 484 77.3
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 9.6e-203 710.3 484 77.1
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.3e-202 709.9 484 76.4
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.6e-202 709.5 484 76.9
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 2.1e-202 709.1 484 76.7
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 2.1e-202 709.1 484 77.3
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 2.1e-202 709.1 484 76.7
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 2.8e-202 708.8 484 77.1
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.8e-202 708.8 484 77.3
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 3.7e-202 708.4 484 76.9
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 3.7e-202 708.4 484 76.9
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 3.7e-202 708.4 484 76.9
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.7e-202 708.4 484 77.1
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 3.7e-202 708.4 484 76.7
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.7
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.7
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.7
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.7
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.4
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.8e-202 708.0 484 76.7
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.2e-202 707.6 484 76.7
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.2e-202 707.6 484 76.7
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 6.2e-202 707.6 484 76.9
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 6.2e-202 707.6 484 76.7
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 8.1e-202 707.2 484 76.7
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 8.1e-202 707.2 484 77.1
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.7
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 77.1
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 77.1
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.7
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.7
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.4
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.4
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.1e-201 706.8 484 76.9
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.4e-201 706.4 484 76.9
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.4e-201 706.4 488 76.6
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.4e-201 706.4 488 76.6
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.8e-201 706.1 484 76.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.8e-201 706.1 484 76.0
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 2.4e-201 705.7 484 76.0
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 2.4e-201 705.7 484 76.0
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.4e-201 705.7 484 76.9
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 2.4e-201 705.7 484 76.7
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.4e-201 705.7 484 76.7
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 3.1e-201 705.3 482 76.8
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 3.1e-201 705.3 482 76.8
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 3.1e-201 705.3 484 76.4
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 4.0e-201 704.9 484 76.4
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.0e-201 704.9 484 76.7
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.0e-201 704.9 488 76.4
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 5.3e-201 704.5 484 76.4
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 5.3e-201 704.5 484 76.4
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 6.9e-201 704.1 484 76.4
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 9.0e-201 703.7 484 76.2
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 9.0e-201 703.7 484 76.2
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.2e-200 703.4 484 76.9
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.2e-200 703.4 484 76.2
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.2e-200 703.4 484 76.2
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.2e-200 703.4 484 76.4
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.2e-200 703.4 484 76.4
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 2.0e-200 702.6 484 76.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 2.0e-200 702.6 484 76.2
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 4.5e-200 701.4 484 76.0
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 4.5e-200 701.4 484 76.2
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 5.8e-200 701.0 484 75.8
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.3e-199 699.9 484 75.8
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.3e-199 699.9 479 76.6
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.3e-199 699.9 484 76.2
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.7e-199 699.5 484 75.4
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 2.9e-199 698.7 482 75.9
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 3.8e-199 698.4 484 75.8
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 4.9e-199 698.0 484 75.6
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 6.5e-199 697.6 484 75.2
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 8.4e-199 697.2 484 75.4
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 1.9e-198 696.0 482 75.7
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.2e-198 694.9 484 75.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 5.5e-198 694.5 484 75.0
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-197 693.3 484 74.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-197 693.3 484 74.8
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.2e-197 693.3 484 74.8
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-197 693.3 484 74.8
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.6e-197 693.0 485 75.1
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.0e-196 690.3 474 76.6
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 1.3e-196 689.9 482 75.7
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 2.8e-194 682.2 484 74.4
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.4e-193 679.9 485 73.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.8e-193 679.5 484 74.0
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 4.5e-192 674.9 510 71.2
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 5.9e-192 674.5 484 73.6
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 7.6e-192 674.1 484 73.6
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.3e-191 673.3 484 73.6
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.7e-191 672.9 471 76.0
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 5.5e-190 667.9 484 72.1
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.2e-189 666.8 469 75.1
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 4.6e-189 664.8 484 71.7
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.6e-189 664.8 484 71.7
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.3e-188 663.3 483 71.6
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.5e-187 659.8 484 71.7
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 2.5e-187 659.1 492 72.0
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.3e-187 658.7 482 71.8
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 5.9e-184 647.9 484 68.6
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 6.5e-183 644.4 443 77.4
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 1.8e-177 626.3 484 68.0
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.1e-171 607.1 486 63.4
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.7e-171 604.7 484 68.2
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 9.7e-171 604.0 486 63.2
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 6.3e-170 601.3 469 66.1
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.4e-169 600.1 469 68.0
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.4e-164 583.6 486 61.5
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.4e-161 572.8 484 62.2
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 3.5e-160 568.9 484 65.1
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 8.3e-154 547.7 320 88.4
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 7.7e-152 541.2 315 88.6
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.8e-149 532.7 397 70.0
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.0e-148 530.8 382 74.1
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 1.3e-146 523.9 339 80.8
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 6.6e-143 511.5 484 59.9
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.5e-142 509.6 390 68.7
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 1.7e-127 460.3 339 71.4
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 7.8e-120 434.9 469 52.5
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.2e-113 412.9 238 88.2
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 6.6e-111 405.2 234 87.2
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 6.2e-109 398.7 318 69.8
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 3.2e-105 386.3 297 69.4
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.9e-95 352.8 277 67.5
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.4e-89 333.6 295 63.7
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 6.0e-88 328.9 237 73.8
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 3.4e-83 313.2 187 84.5
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 6.0e-80 302.4 250 65.2
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.8e-76 290.8 227 70.0
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 3.1e-76 290.0 166 87.3
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 6.7e-71 272.3 282 58.9
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 4.2e-65 253.1 217 62.2
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 8.8e-63 245.4 173 72.8
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.6e-51 208.0 125 82.4
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 1.0e-47 195.3 172 61.0
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 2.3e-47 194.1 111 82.9
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 7.5e-46 189.1 111 82.0
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 5.3e-44 183.0 462 34.0
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 8.5e-42 175.6 189 55.6
MD12G1233900 Malus domestica HOM05D003084 ORTHO05D003580 6.3e-37 159.5 138 65.2
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.8e-34 150.2 95 80.0
Aqoxy1G02838 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.2e-30 138.7 175 48.6
Aqoxy6G00957 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.2e-30 138.7 159 52.2
TPR.G36215 Trifolium pratense HOM05D003084 ORTHO05D003580 2.0e-30 137.9 172 45.3
Aqoxy7G00614 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 3.4e-30 137.1 175 48.6
Aqoxy1G02836 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.2e-29 134.4 175 47.4
Aqoxy7G00613 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.2e-29 134.4 175 47.4
Nitab4.5_0002746g0040 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.3e-23 114.4 79 73.4
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 1.5e-22 111.7 74 73.0
Aqoxy5G03430 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 3.4e-22 110.5 143 46.2
Solyc07g041790.1 Solanum lycopersicum HOM05D003084 ORTHO05D003580 3.7e-21 107.1 73 74.0
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 1.7e-18 98.2 65 72.3
DCAR_028103 Daucus carota HOM05D003084 ORTHO05D018407 5.0e-18 96.7 99 53.5
Cc02_g08750 Coffea canephora HOM05D003084 ORTHO05D003580 5.6e-17 93.2 65 72.3
Aqoxy4G01165 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.5e-06 58.5 51 60.8
CAN.G128.99 Capsicum annuum HOM05D003084 ORTHO05D003580 1.5e-06 58.5 51 58.8


User provided reference genes

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