Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 1.4e-153 546.2 267 100.0
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 1.6e-109 399.8 229 80.8
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 1.6e-109 399.8 233 82.4
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 2.1e-109 399.4 233 81.1
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 2.1e-109 399.4 233 81.5
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 3.6e-109 398.7 233 81.1
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 3.6e-109 398.7 233 82.0
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 3.6e-109 398.7 257 76.3
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 4.7e-109 398.3 232 80.2
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 4.7e-109 398.3 233 81.1
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 8.0e-109 397.5 233 79.8
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.0e-108 397.1 230 81.7
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.4e-108 396.7 233 80.3
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 1.4e-108 396.7 233 80.7
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 1.4e-108 396.7 233 81.1
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 1.8e-108 396.4 233 81.5
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 2.3e-108 396.0 230 80.9
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 2.3e-108 396.0 233 79.8
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 2.3e-108 396.0 230 81.3
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 3.1e-108 395.6 233 81.1
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 3.1e-108 395.6 233 80.3
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 3.1e-108 395.6 230 81.3
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 4.0e-108 395.2 233 79.8
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 5.2e-108 394.8 233 79.8
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 5.2e-108 394.8 233 80.3
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 5.2e-108 394.8 233 79.8
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 5.2e-108 394.8 233 79.8
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 6.8e-108 394.4 233 79.8
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 6.8e-108 394.4 233 80.7
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 1.2e-107 393.7 232 78.0
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 1.2e-107 393.7 233 80.3
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.2e-107 393.7 232 79.3
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 1.2e-107 393.7 230 81.3
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 1.5e-107 393.3 233 80.3
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 2.0e-107 392.9 233 79.8
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 2.0e-107 392.9 233 80.3
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 2.0e-107 392.9 230 80.9
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.4e-107 392.1 233 79.8
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 3.4e-107 392.1 233 80.3
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 3.4e-107 392.1 233 78.5
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 3.4e-107 392.1 233 79.8
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 3.4e-107 392.1 230 80.9
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 4.4e-107 391.7 233 79.4
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 5.8e-107 391.3 232 77.6
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 5.8e-107 391.3 233 79.8
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 5.8e-107 391.3 233 79.8
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 5.8e-107 391.3 233 79.8
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 5.8e-107 391.3 232 80.6
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 5.8e-107 391.3 233 79.8
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 7.5e-107 391.0 233 80.3
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 7.5e-107 391.0 233 79.8
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 7.5e-107 391.0 230 80.4
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 1.3e-106 390.2 233 80.3
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.3e-106 390.2 233 79.0
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 1.3e-106 390.2 233 79.0
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 1.7e-106 389.8 230 80.0
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 2.2e-106 389.4 230 80.0
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 2.9e-106 389.0 233 79.8
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 2.9e-106 389.0 233 79.8
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 3.7e-106 388.7 233 77.7
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 3.7e-106 388.7 233 78.5
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 6.4e-106 387.9 233 79.0
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 6.4e-106 387.9 233 79.0
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 1.1e-105 387.1 233 78.5
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 1.4e-105 386.7 233 78.1
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 1.9e-105 386.3 230 79.1
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 1.9e-105 386.3 233 78.1
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 1.9e-105 386.3 232 78.0
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 3.2e-105 385.6 230 79.6
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 3.2e-105 385.6 230 79.6
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 3.2e-105 385.6 233 78.1
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 3.2e-105 385.6 233 79.0
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 4.1e-105 385.2 233 79.8
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 5.4e-105 384.8 233 79.4
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 7.0e-105 384.4 233 78.5
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 9.2e-105 384.0 230 79.6
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 9.2e-105 384.0 232 77.6
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 9.2e-105 384.0 233 78.1
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.2e-104 383.6 233 78.5
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 1.2e-104 383.6 233 78.5
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 1.6e-104 383.3 233 76.4
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 2.0e-104 382.9 233 79.4
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 2.7e-104 382.5 233 78.5
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 4.6e-104 381.7 233 78.5
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 4.6e-104 381.7 233 76.8
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 6.0e-104 381.3 230 79.6
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 1.0e-103 380.6 233 77.3
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.3e-103 380.2 232 78.4
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 1.7e-103 379.8 233 78.5
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 3.9e-103 378.6 235 77.9
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 8.6e-103 377.5 233 77.7
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 8.6e-103 377.5 262 72.9
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 1.1e-102 377.1 233 76.4
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 1.9e-102 376.3 265 69.1
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 7.3e-102 374.4 233 75.5
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 7.3e-102 374.4 233 76.8
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 1.4e-100 370.2 256 71.1
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 8.9e-100 367.5 279 66.3
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 2.0e-99 366.3 233 73.8
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 1.3e-98 363.6 233 75.5
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 1.7e-98 363.2 233 76.4
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 2.9e-98 362.5 298 62.4
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 1.1e-97 360.5 295 61.0
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 4.1e-97 358.6 233 75.1
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 5.4e-97 358.2 230 76.5
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 5.4e-97 358.2 241 71.8
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 9.2e-97 357.5 233 75.5
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 1.6e-96 356.7 230 72.2
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 7.8e-96 354.4 233 73.8
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 1.0e-95 354.0 230 76.1
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 1.0e-95 354.0 233 71.7
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 3.9e-95 352.1 208 78.4
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 3.9e-95 352.1 232 72.0
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 3.3e-94 349.0 243 69.5
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.6e-93 346.7 266 68.0
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 2.3e-92 342.8 235 70.6
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 8.9e-92 340.9 213 77.9
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 1.4e-89 333.6 335 54.3
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 2.1e-88 329.7 233 70.0
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 6.6e-87 324.7 232 66.4
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 8.4e-82 307.8 224 64.7
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 6.6e-79 298.1 176 79.5
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 5.6e-78 295.0 265 58.9
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 2.4e-76 289.7 232 63.8
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 4.6e-72 275.4 175 73.7
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 1.3e-71 273.9 232 58.2
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 1.1e-70 270.8 227 59.5
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 4.8e-69 265.4 154 81.2
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 4.3e-54 215.7 139 75.5
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 3.1e-52 209.5 120 78.3
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 1.2e-48 197.6 129 72.9
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 5.7e-46 188.7 229 44.5
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 2.8e-29 133.3 118 57.6
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 2.5e-25 120.2 205 35.1
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 2.8e-21 106.7 226 33.2
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 7.7e-19 98.6 75 62.7
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 1.7e-18 97.4 77 62.3
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 3.2e-17 93.2 58 75.9
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 6.1e-16 89.0 58 72.4
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 8.0e-16 88.6 54 72.2
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 9.8e-14 81.6 57 66.7
Cfa023090 Carpinus fangiana HOM05D005173 ORTHO05D126580 3.7e-13 79.7 204 27.0
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 5.4e-12 75.9 80 48.8
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 5.9e-11 72.4 209 27.8
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 3.6e-08 63.2 44 65.9
Haze_27227 Corylus avellana HOM05D000464 ORTHO05D000408 4.7e-08 62.8 111 30.6
DCAR_007212 Daucus carota HOM05D000464 ORTHO05D000408 1.0e-07 61.6 106 31.1
AT1G13610 Arabidopsis thaliana HOM05D000464 ORTHO05D000408 2.3e-07 60.5 106 32.1
Glyma.06G174900 Glycine max HOM05D000464 ORTHO05D000408 6.8e-07 58.9 123 30.9
Glyma.18G276000 Glycine max HOM05D000464 ORTHO05D000408 1.2e-06 58.2 123 30.9
ATR0691G084 Amborella trichopoda HOM05D000464 ORTHO05D000408 1.5e-06 57.8 189 27.0
Lalb_Chr08g0236891 Lupinus albus HOM05D000464 ORTHO05D000408 1.5e-06 57.8 123 30.9
Os02g0796600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D000408 1.5e-06 57.8 129 27.9
arahy.Tifrunner.gnm1.ann1.3KSC2Z Arachis hypogaea HOM05D000464 ORTHO05D000408 2.0e-06 57.4 123 30.9
arahy.Tifrunner.gnm1.ann1.LH23G4 Arachis hypogaea HOM05D000464 ORTHO05D000408 2.0e-06 57.4 123 30.9
Sabra10G0105500 Salix brachista HOM05D000464 ORTHO05D000408 2.0e-06 57.4 106 29.2
Lalb_Chr11g0069911 Lupinus albus HOM05D000464 ORTHO05D000408 2.6e-06 57.0 106 30.2
Phvul.009G170900 Phaseolus vulgaris HOM05D000464 ORTHO05D000408 2.6e-06 57.0 123 30.9
Eucgr.J01512 Eucalyptus grandis HOM05D000464 ORTHO05D000408 3.4e-06 56.6 123 26.8
Os12g0286600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D000408 4.4e-06 56.2 123 29.3
Dinv11125 Davidia involucrata HOM05D000464 ORTHO05D000408 5.7e-06 55.8 123 30.1
Glyma.04G190500 Glycine max HOM05D000464 ORTHO05D000408 5.7e-06 55.8 123 30.1
Oeu044596.1 Olea europaea HOM05D000464 ORTHO05D000408 5.7e-06 55.8 141 28.4
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 5.7e-06 55.8 38 65.8
FAN08G0579 Fragaria x ananassa HOM05D000464 ORTHO05D006292 7.5e-06 55.5 106 30.2
Lj1g0009132 Lotus japonicus HOM05D000464 ORTHO05D000408 7.5e-06 55.5 123 30.1
VMungo1309G2760 Vigna mungo HOM05D000464 ORTHO05D000408 7.5e-06 55.5 123 30.1
SalBow6G4172 Salvia bowleyana HOM05D000464 ORTHO05D000408 9.8e-06 55.1 123 30.1
SalBow6G5374 Salvia bowleyana HOM05D000464 ORTHO05D000408 9.8e-06 55.1 123 30.1


User provided reference genes

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