Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G114 Amborella trichopoda HOM05D000725 ORTHO05D004053 0.0e+00 1308.5 652 100.0
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 2.4e-37 161.4 643 27.7
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 1.8e-32 145.2 338 30.2
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 1.5e-31 142.1 327 30.9
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 1.3e-30 139.0 411 28.5
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.6e-30 138.7 652 26.4
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 4.8e-30 137.1 333 29.1
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 4.8e-30 137.1 331 32.3
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 1.1e-29 136.0 334 29.9
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 9.0e-29 132.9 221 38.5
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 9.0e-29 132.9 364 27.7
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 9.0e-29 132.9 373 28.4
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 1.5e-28 132.1 513 27.7
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 1.5e-28 132.1 328 31.1
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.5e-28 132.1 643 27.2
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 2.6e-28 131.3 334 31.7
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 3.4e-28 131.0 379 28.0
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 3.4e-28 131.0 323 27.9
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 3.4e-28 131.0 343 29.4
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 4.5e-28 130.6 332 29.5
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 4.5e-28 130.6 639 25.8
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 4.5e-28 130.6 658 27.4
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 5.8e-28 130.2 206 37.4
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 5.8e-28 130.2 339 31.3
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 7.6e-28 129.8 331 28.4
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 1.3e-27 129.0 645 25.4
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 1.3e-27 129.0 335 30.4
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 2.2e-27 128.3 329 29.2
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 2.9e-27 127.9 208 36.5
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 2.9e-27 127.9 400 28.0
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 4.9e-27 127.1 336 28.3
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 4.9e-27 127.1 327 28.4
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 4.9e-27 127.1 331 27.8
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 4.9e-27 127.1 400 28.2
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 4.9e-27 127.1 650 25.1
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 8.4e-27 126.3 226 32.7
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 8.4e-27 126.3 329 30.4
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 8.4e-27 126.3 325 29.8
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 8.4e-27 126.3 641 24.3
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 1.4e-26 125.6 334 27.8
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 1.4e-26 125.6 331 27.5
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 2.5e-26 124.8 332 31.0
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 3.2e-26 124.4 664 25.2
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 3.2e-26 124.4 220 32.7
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 4.2e-26 124.0 337 31.2
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 5.5e-26 123.6 320 30.9
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 7.1e-26 123.2 336 28.3
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 7.1e-26 123.2 334 27.5
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 7.1e-26 123.2 334 27.5
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 7.1e-26 123.2 634 25.2
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 7.1e-26 123.2 659 24.7
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 9.3e-26 122.9 390 28.2
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 9.3e-26 122.9 649 24.8
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 1.6e-25 122.1 334 27.8
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 1.6e-25 122.1 347 27.7
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 2.1e-25 121.7 326 28.5
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 2.7e-25 121.3 216 34.7
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 3.5e-25 120.9 614 24.9
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 3.5e-25 120.9 675 24.0
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 4.6e-25 120.6 660 23.6
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 4.6e-25 120.6 694 23.3
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 6.0e-25 120.2 664 25.0
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 7.9e-25 119.8 325 29.2
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 7.9e-25 119.8 204 34.8
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 1.0e-24 119.4 672 25.4
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 1.3e-24 119.0 327 29.7
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 2.3e-24 118.2 213 33.8
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 2.3e-24 118.2 348 27.9
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 3.0e-24 117.9 323 27.6
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 3.9e-24 117.5 211 31.8
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 5.1e-24 117.1 331 29.6
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 6.7e-24 116.7 505 26.3
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 6.7e-24 116.7 646 24.8
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 8.7e-24 116.3 240 30.4
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 8.7e-24 116.3 436 25.2
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 8.7e-24 116.3 436 25.2
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.1e-23 115.9 179 39.7
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 1.5e-23 115.5 326 29.1
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 1.5e-23 115.5 640 25.6
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 1.9e-23 115.2 652 24.2
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 2.5e-23 114.8 181 37.6
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 3.3e-23 114.4 218 32.1
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 4.3e-23 114.0 649 24.8
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 4.3e-23 114.0 219 31.5
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 4.3e-23 114.0 343 27.4
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 7.4e-23 113.2 505 26.1
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 7.4e-23 113.2 655 22.4
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 9.7e-23 112.8 664 25.9
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 9.7e-23 112.8 341 27.6
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 2.1e-22 111.7 189 36.5
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 2.8e-22 111.3 651 25.3
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 8.2e-22 109.8 639 23.6
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 1.1e-21 109.4 384 28.1
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 1.8e-21 108.6 222 33.8
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 1.8e-21 108.6 213 33.8
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 1.8e-21 108.6 219 32.0
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 2.4e-21 108.2 209 31.6
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 2.4e-21 108.2 219 32.4
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 5.3e-21 107.1 214 34.1
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 5.3e-21 107.1 213 32.4
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 6.9e-21 106.7 365 27.1
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 6.9e-21 106.7 222 33.8
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 9.0e-21 106.3 635 24.7
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 1.5e-20 105.5 662 24.5
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 2.0e-20 105.1 649 23.0
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 4.5e-20 104.0 639 23.5
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 4.5e-20 104.0 662 23.3
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 7.6e-20 103.2 317 28.4
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 1.0e-19 102.8 219 32.0
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 1.7e-19 102.1 209 33.0
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.4e-18 99.0 605 24.3
Potri.010G183766 Populus trichocarpa HOM05D000725 ORTHO05D004053 3.2e-18 97.8 179 33.0
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 5.5e-18 97.1 325 28.0
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 5.5e-18 97.1 643 23.5
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 7.2e-18 96.7 418 25.6
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 9.3e-18 96.3 171 31.6
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 2.7e-17 94.7 222 27.9
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 3.6e-17 94.4 207 33.3
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 3.6e-17 94.4 645 22.5
TAR636G0222 Trochodendron aralioides HOM05D000725 ORTHO05D004053 7.9e-17 93.2 116 41.4
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 1.0e-16 92.8 644 22.2
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 1.3e-16 92.4 376 25.3
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 1.3e-16 92.4 238 25.2
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 6.7e-16 90.1 647 22.1
TPR.G30914 Trifolium pratense HOM05D026095 ORTHO05D004053 6.7e-16 90.1 216 29.6
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 2.5e-15 88.2 205 29.3
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 7.4e-15 86.7 450 24.7
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 9.7e-15 86.3 589 23.4
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 9.7e-15 86.3 221 26.2
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 8.2e-14 83.2 140 30.7
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 1.8e-13 82.0 618 21.5
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 6.9e-13 80.1 129 37.2
AagrBONN_evm.TU.Sc2ySwM_340.163 Anthoceros agrestis HOM05D000725 ORTHO05D021317 1.7e-11 75.5 148 33.8
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.7e-11 75.5 123 35.0
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 3.8e-11 74.3 123 35.0
Carub.0005s0881 Capsella rubella HOM05D000725 ORTHO05D004053 8.5e-11 73.2 143 36.4
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 8.5e-11 73.2 600 25.7
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 2.7e-09 68.2 408 24.8
Aa31LG4G13300 Aethionema arabicum HOM05D000725 ORTHO05D004053 1.4e-08 65.9 94 43.6
Pp3c25_10710 Physcomitrium patens HOM05D000725 ORTHO05D002005 1.4e-08 65.9 112 33.9
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.3e-08 65.1 123 31.7


User provided reference genes

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