Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.0e-254 882.1 486 100.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.4e-169 597.8 499 66.7
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.1e-167 592.4 499 64.5
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.7e-165 586.6 506 62.6
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.0e-162 575.9 508 61.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.7e-160 568.9 480 63.3
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 4.8e-160 568.5 504 63.5
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 7.2e-156 554.7 518 61.0
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.6e-155 552.4 477 66.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.7e-152 542.3 504 63.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 6.3e-152 541.6 513 59.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.4e-151 539.7 504 63.5
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.6e-150 536.2 507 57.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.6e-150 536.2 503 58.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 3.8e-149 532.3 514 59.7
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.1e-148 530.8 500 59.0
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.1e-148 530.8 507 61.1
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-148 530.0 500 61.8
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.5e-148 529.6 494 64.8
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.5e-148 529.6 492 57.7
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.2e-148 529.3 507 57.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 3.2e-148 529.3 494 64.0
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 3.2e-148 529.3 507 63.1
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 7.2e-148 528.1 507 63.7
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 9.4e-148 527.7 501 60.7
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.8e-146 523.5 495 59.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 2.3e-146 523.1 458 63.3
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 8.8e-146 521.2 504 56.5
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 8.8e-146 521.2 408 67.2
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.0e-145 520.0 459 61.2
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.4e-145 518.8 505 57.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 7.4e-145 518.1 508 58.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 7.4e-145 518.1 483 59.4
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.7e-144 516.9 429 63.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.8e-144 516.2 511 61.3
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.4e-143 513.1 475 64.0
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.1e-143 512.3 475 64.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 5.3e-143 511.9 511 56.2
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.5e-142 510.4 490 59.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 2.0e-142 510.0 513 58.9
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 3.4e-142 509.2 488 60.0
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.4e-142 509.2 494 59.9
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.0e-141 507.7 455 60.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.7e-141 506.9 496 59.5
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.5e-141 505.0 446 62.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 6.5e-141 505.0 513 55.8
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 8.5e-141 504.6 457 62.1
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.1e-140 504.2 491 62.3
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.5e-140 503.1 489 59.3
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 5.5e-140 501.9 487 58.5
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 7.2e-140 501.5 516 53.7
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.6e-139 500.4 461 62.9
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.6e-139 500.4 453 59.6
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.7e-139 499.6 493 57.4
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 6.1e-139 498.4 496 56.9
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 7.9e-139 498.0 454 61.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-138 496.9 453 60.5
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.8e-138 496.9 453 60.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 5.2e-138 495.4 510 56.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.2e-138 495.4 457 58.0
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 5.2e-138 495.4 464 58.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 6.7e-138 495.0 490 57.8
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.7e-138 495.0 489 56.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 8.8e-138 494.6 409 64.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.0e-137 493.4 453 58.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.7e-136 490.3 445 60.0
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.7e-136 490.3 400 63.8
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.2e-136 490.0 486 55.6
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 4.8e-136 488.8 452 65.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.8e-136 488.8 495 56.8
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 6.3e-136 488.4 398 65.6
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 6.3e-136 488.4 443 60.0
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 8.2e-136 488.0 448 59.8
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.1e-135 487.6 379 72.6
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-135 487.6 488 55.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-135 486.9 475 61.5
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 3.1e-135 486.1 434 61.1
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.1e-135 486.1 506 58.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.3e-135 485.3 489 62.4
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 7.0e-135 485.0 435 61.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 9.1e-135 484.6 473 55.8
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.2e-134 484.2 474 57.6
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-134 483.8 384 67.4
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.6e-134 483.8 455 60.4
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.0e-134 483.4 482 60.2
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 4.5e-134 482.3 420 60.2
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.7e-133 480.3 442 58.4
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.7e-133 480.3 448 65.2
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.9e-133 479.6 495 56.8
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 5.0e-133 478.8 487 54.6
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 2.5e-132 476.5 396 66.4
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.6e-131 473.8 441 61.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.6e-131 472.6 480 59.4
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 3.6e-131 472.6 480 59.4
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.7e-131 472.2 449 58.8
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 6.1e-131 471.9 511 57.1
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 6.1e-131 471.9 381 66.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 6.1e-131 471.9 458 57.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.1e-131 471.9 496 59.5
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-130 469.9 461 57.5
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.0e-130 469.2 485 57.9
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 8.8e-130 468.0 450 58.7
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.2e-129 467.6 487 58.5
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-129 466.5 434 58.5
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.7e-129 465.3 490 58.8
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.3e-128 464.2 447 57.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.7e-128 463.8 458 61.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-128 463.4 487 54.8
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.2e-128 463.4 487 54.8
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.8e-128 462.2 485 56.1
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 4.8e-128 462.2 482 55.2
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 8.2e-128 461.5 459 56.4
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.4e-127 460.7 442 57.5
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 5.3e-127 458.8 483 53.8
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 7.0e-127 458.4 383 63.2
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.0e-126 456.8 485 55.7
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.7e-125 453.8 475 57.5
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.2e-125 453.4 487 55.2
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.9e-125 453.0 451 59.2
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 6.5e-125 451.8 448 58.7
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-124 450.7 451 59.0
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 9.4e-124 448.0 488 57.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.7e-123 446.4 377 61.0
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 3.6e-123 446.0 454 57.5
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 4.0e-122 442.6 450 56.9
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.2e-121 441.0 448 57.1
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.6e-121 439.9 453 57.8
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.3e-120 437.6 476 56.3
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.7e-120 436.0 458 55.9
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 4.8e-120 435.6 479 54.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.3e-120 434.9 479 54.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 8.3e-120 434.9 383 66.6
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.8e-119 433.7 457 54.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 2.7e-118 429.9 506 53.0
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.5e-118 429.5 409 57.9
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.9e-118 428.7 470 54.9
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.0e-117 427.9 507 47.9
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.6e-117 424.9 316 68.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-116 424.5 453 55.4
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-116 423.7 477 54.3
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 4.7e-115 419.1 450 52.2
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 8.0e-115 418.3 437 57.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.0e-114 417.9 459 56.0
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.8e-114 417.2 458 52.6
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.7e-112 410.6 283 70.3
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.6e-110 404.1 414 55.6
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 7.3e-100 368.6 377 54.1
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.6e-99 367.5 346 56.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.2e-90 335.9 471 47.6
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 8.9e-90 335.1 382 47.1
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.7e-85 320.9 270 66.3
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.8e-74 284.3 373 46.1
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.7e-64 251.1 192 69.8
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.1e-58 231.9 583 31.6
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.8e-53 214.5 195 68.7
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 2.5e-47 194.1 245 45.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.0e-41 174.5 306 41.2
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.5e-39 167.5 147 59.9
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.0e-37 160.6 128 74.2
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 5.7e-36 156.4 117 59.8
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-33 147.5 137 59.1
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 1.9e-31 141.4 343 32.4
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.6e-30 138.3 145 55.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 7.9e-30 136.0 98 65.3
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-29 134.8 129 57.4
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-25 121.7 99 58.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.2e-24 117.9 164 43.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.2e-24 117.9 164 43.3
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.2e-22 112.1 196 39.3
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.0e-21 107.5 303 28.7
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.7e-14 83.6 299 27.8
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 8.0e-14 82.8 69 49.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.0e-08 65.9 47 61.7
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 1.0e-08 65.9 71 53.5


User provided reference genes

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