Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 4.7e-149 531.2 272 100.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.7e-112 409.1 276 79.0
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.8e-109 399.1 278 77.3
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-108 397.1 275 76.0
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.1e-108 397.1 277 75.1
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 268 77.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.1e-108 395.6 275 76.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 4.1e-108 395.2 264 78.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.9e-108 394.4 268 78.0
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.5e-107 393.3 268 78.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.6e-107 392.5 257 80.5
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.9e-107 391.3 273 78.0
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 7.7e-107 391.0 255 79.6
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.3e-106 390.2 275 77.1
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.7e-106 389.8 272 77.6
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.2e-106 389.4 272 74.6
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.9e-106 389.0 279 74.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 3.8e-106 388.7 272 76.8
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 74.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.5e-105 386.0 261 78.2
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.2e-105 385.6 272 74.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.2e-105 385.6 272 74.3
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 3.2e-105 385.6 276 73.6
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.2e-105 385.2 272 74.3
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.2e-105 385.2 272 75.0
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.5e-105 384.8 273 76.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 7.2e-105 384.4 273 74.7
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 9.4e-105 384.0 240 81.2
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-104 383.3 272 74.6
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.6e-104 383.3 275 76.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.6e-104 383.3 275 75.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.7e-104 382.5 268 74.6
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.6e-104 382.1 269 75.5
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 4.6e-104 381.7 245 82.9
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 4.6e-104 381.7 258 79.1
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 6.1e-104 381.3 271 75.6
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 6.1e-104 381.3 271 75.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.1e-104 381.3 272 73.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.0e-103 380.6 242 82.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.0e-103 380.6 272 73.9
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.0e-103 380.6 270 73.3
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.8e-103 379.8 271 76.0
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 3.0e-103 379.0 271 74.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.9e-103 378.6 264 74.6
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.9e-103 378.6 276 74.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 8.8e-103 377.5 271 73.1
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 8.8e-103 377.5 214 89.3
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-102 376.7 269 75.5
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 269 75.5
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 269 75.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.5e-102 376.7 269 75.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.5e-102 376.7 256 77.7
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.0e-102 376.3 273 73.6
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 2.0e-102 376.3 267 74.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.5e-102 375.9 273 73.6
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.5e-102 375.9 269 75.5
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.5e-102 375.9 273 73.6
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.5e-102 375.9 215 87.4
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.5e-102 375.9 215 87.4
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.3e-102 375.2 269 75.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 7.4e-102 374.4 273 73.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 7.4e-102 374.4 216 86.6
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 7.4e-102 374.4 216 86.6
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 7.4e-102 374.4 216 86.6
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 9.7e-102 374.0 277 71.8
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.3e-101 373.6 278 71.6
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.3e-101 373.6 278 72.3
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.7e-101 373.2 280 72.9
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-101 373.2 272 73.2
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 2.2e-101 372.9 273 73.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.2e-101 372.9 280 75.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 2.2e-101 372.9 273 73.3
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.8e-101 372.5 276 72.8
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 4.8e-101 371.7 273 73.3
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.4e-100 370.2 269 73.2
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.8e-100 369.8 272 75.4
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 283 72.1
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-100 369.4 273 72.2
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.1e-100 369.0 269 73.6
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 3.1e-100 369.0 244 79.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.1e-100 368.6 273 72.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 5.3e-100 368.2 268 74.6
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.9e-100 367.9 270 72.2
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 6.9e-100 367.9 262 76.0
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.2e-99 367.1 249 79.1
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.2e-99 367.1 246 78.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.5e-99 366.7 243 80.2
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.0e-99 366.3 250 78.8
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.6e-99 365.9 271 74.9
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.4e-99 365.5 254 77.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 277 70.8
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 276 70.7
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 4.5e-99 365.2 279 72.0
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.9e-99 364.8 248 78.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 5.9e-99 364.8 275 72.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 5.9e-99 364.8 279 71.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.0e-98 364.0 252 77.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.0e-98 364.0 246 80.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.3e-98 363.6 250 78.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.9e-98 362.5 279 72.0
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.8e-98 362.1 216 84.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.1e-97 360.5 276 69.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.9e-97 359.8 269 73.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 4.2e-97 358.6 271 72.3
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.6e-96 356.7 216 83.3
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.6e-96 356.7 227 81.9
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.1e-96 356.3 270 70.4
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.0e-95 354.0 271 73.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.4e-95 353.6 271 73.4
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.8e-95 353.2 197 87.3
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 6.7e-95 351.3 276 68.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.5e-94 350.1 272 72.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 5.7e-94 348.2 269 71.4
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 5.7e-94 348.2 284 67.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 8.2e-93 344.4 217 83.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.0e-91 339.7 195 86.7
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.0e-91 339.7 194 85.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 5.7e-86 321.6 213 75.1
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 9.1e-84 314.3 199 76.9
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.0e-83 313.2 217 73.7
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.2e-80 303.9 239 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.6e-80 303.5 251 64.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.4e-76 289.7 170 82.9
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 3.8e-66 255.8 198 72.7
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.5e-65 253.1 163 80.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 3.6e-64 249.2 192 73.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 5.2e-63 245.4 134 90.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.4e-62 242.7 161 73.9
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.8e-56 223.0 194 67.5
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 4.0e-55 219.2 165 66.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 2.2e-45 186.8 259 49.0
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-43 180.3 123 74.8
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.7e-40 169.1 123 76.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 2.3e-39 166.8 213 53.1
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.0e-38 163.7 96 81.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.9e-38 161.4 182 51.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.9e-38 161.4 182 51.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.9e-22 108.2 81 75.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 3.4e-14 83.2 110 56.4
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.6e-11 72.8 141 33.3
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.1e-09 68.2 183 31.1
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 6.2e-08 62.4 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.8e-07 60.8 47 68.1
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 4.0e-07 59.7 99 43.4
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 5.3e-07 59.3 99 43.4
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 6.9e-07 58.9 60 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2075 Anthoceros agrestis HOM05D041339 ORTHO05D031170 1.0e-05 55.1 99 38.4


User provided reference genes

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