Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.5e-63 243.8 117 100.0
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.5e-43 177.2 98 85.7
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.2e-11 73.6 100 42.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.2e-11 73.6 100 42.0
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.1e-09 67.0 53 54.7
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.1e-09 67.0 76 50.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.4e-09 65.9 62 53.2
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.4e-09 65.9 66 53.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.4e-09 65.9 64 53.1
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.4e-09 65.9 47 63.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.4e-09 65.9 47 63.8
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 3.2e-09 65.5 64 53.1
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.4e-09 64.7 57 56.1
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 7.1e-09 64.3 50 60.0
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 7.1e-09 64.3 77 45.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 7.1e-09 64.3 73 45.2
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.1e-09 64.3 54 59.3
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 9.2e-09 63.9 68 50.0
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 9.2e-09 63.9 59 47.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.2e-08 63.5 50 58.0
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.2e-08 63.5 66 53.0
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.2e-08 63.5 62 53.2
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.2e-08 63.5 62 53.2
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.2e-08 63.5 62 53.2
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-08 63.2 62 50.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 2.1e-08 62.8 66 51.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.1e-08 62.8 64 46.9
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.7e-08 62.4 57 57.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.7e-08 62.4 54 59.3
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.7e-08 62.4 70 48.6
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.5e-08 62.0 57 57.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 3.5e-08 62.0 54 55.6
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.6e-08 61.6 62 48.4
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.6e-08 61.6 64 50.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 6.0e-08 61.2 67 50.7
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 6.0e-08 61.2 62 48.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 6.0e-08 61.2 76 46.1
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 6.0e-08 61.2 51 49.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 6.0e-08 61.2 86 43.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 7.8e-08 60.8 60 50.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 7.8e-08 60.8 54 53.7
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.0e-07 60.5 68 48.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.0e-07 60.5 58 55.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.0e-07 60.5 59 44.1
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.0e-07 60.5 69 44.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.0e-07 60.5 49 57.1
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.3e-07 60.1 48 52.1
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.3e-07 60.1 74 43.2
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-07 60.1 49 55.1
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.7e-07 59.7 65 49.2
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.7e-07 59.7 65 49.2
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 2.3e-07 59.3 47 55.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.3e-07 59.3 52 53.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.3e-07 59.3 67 44.8
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.0e-07 58.9 56 50.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 3.0e-07 58.9 54 57.4
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-07 58.5 48 58.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.9e-07 58.5 48 58.3
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.9e-07 58.5 48 58.3
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.9e-07 58.5 48 58.3
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.9e-07 58.5 48 58.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 3.9e-07 58.5 54 50.0
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 3.9e-07 58.5 66 48.5
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.9e-07 58.5 67 49.3
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.9e-07 58.5 51 58.8
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.9e-07 58.5 54 53.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 5.1e-07 58.2 48 52.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 5.1e-07 58.2 65 46.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 6.6e-07 57.8 52 50.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 6.6e-07 57.8 49 51.0
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 8.6e-07 57.4 60 53.3
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 8.6e-07 57.4 47 55.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 8.6e-07 57.4 65 47.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-06 57.0 68 44.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-06 57.0 63 47.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.5e-06 56.6 50 58.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.5e-06 56.6 85 40.0
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.5e-06 56.6 57 50.9
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.5e-06 56.6 47 55.3
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.9e-06 56.2 51 54.9
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.9e-06 56.2 54 53.7
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.5e-06 55.8 51 51.0
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.3e-06 55.5 61 44.3
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 4.3e-06 55.1 62 48.4
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.3e-06 55.1 54 53.7
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 4.3e-06 55.1 47 53.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 5.6e-06 54.7 45 55.6
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 5.6e-06 54.7 54 53.7
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.6e-06 54.7 54 53.7
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.6e-06 54.7 54 53.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.6e-06 54.7 76 40.8
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 5.6e-06 54.7 65 47.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 9.5e-06 53.9 47 53.2
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 9.5e-06 53.9 52 48.1
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 9.5e-06 53.9 52 48.1


User provided reference genes

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