Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 3.6e-85 318.2 157 100.0
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 8.5e-34 147.5 152 50.7
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.2e-32 143.7 153 49.0
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 6.1e-32 141.4 151 49.7
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 2.3e-31 139.4 151 49.7
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 2.3e-31 139.4 150 48.7
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.6e-30 136.0 149 49.7
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 2.2e-29 132.9 151 51.0
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 6.3e-29 131.3 153 48.4
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.8e-28 129.8 147 48.3
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 2.4e-28 129.4 146 49.3
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 9.1e-28 127.5 158 43.7
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 9.1e-28 127.5 153 46.4
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.2e-27 127.1 155 44.5
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 1.2e-27 127.1 155 45.8
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.6e-27 126.7 155 44.5
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 1.6e-27 126.7 149 44.3
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 2.7e-27 125.9 147 46.9
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 2.7e-27 125.9 157 42.7
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 2.7e-27 125.9 147 42.2
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.7e-27 125.9 160 43.8
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 3.5e-27 125.6 149 44.3
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 4.5e-27 125.2 154 45.5
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 5.9e-27 124.8 156 43.6
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 5.9e-27 124.8 155 44.5
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.9e-27 124.8 147 46.9
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.0e-26 124.0 159 43.4
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.0e-26 124.0 144 49.3
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.0e-26 124.0 150 43.3
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.0e-26 124.0 150 44.0
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.0e-26 124.0 150 45.3
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.0e-26 124.0 147 46.9
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 1.7e-26 123.2 155 47.1
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.7e-26 123.2 150 44.0
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 1.7e-26 123.2 147 45.6
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.7e-26 123.2 147 42.9
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 1.7e-26 123.2 148 46.6
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.9e-26 122.5 150 44.7
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.9e-26 122.5 150 44.7
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.9e-26 122.5 153 44.4
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 3.8e-26 122.1 156 45.5
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.8e-26 122.1 144 46.5
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.8e-26 122.1 147 45.6
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 3.8e-26 122.1 146 43.8
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 5.0e-26 121.7 152 46.7
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 5.0e-26 121.7 151 46.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 5.0e-26 121.7 150 44.0
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 5.0e-26 121.7 151 42.4
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 6.5e-26 121.3 157 42.7
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.5e-26 121.3 148 45.3
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 8.5e-26 120.9 149 45.6
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 8.5e-26 120.9 154 40.3
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 1.5e-25 120.2 149 41.6
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 1.5e-25 120.2 141 44.7
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.5e-25 120.2 147 44.2
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.5e-25 120.2 151 44.4
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.9e-25 119.8 156 43.6
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.9e-25 119.8 128 46.1
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 1.9e-25 119.8 154 42.2
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.5e-25 119.4 157 42.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.5e-25 119.4 147 44.9
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 3.2e-25 119.0 155 45.2
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 3.2e-25 119.0 150 44.7
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 5.5e-25 118.2 154 44.2
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 7.2e-25 117.9 158 43.0
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 7.2e-25 117.9 153 41.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 7.2e-25 117.9 156 42.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 9.4e-25 117.5 149 43.6
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 9.4e-25 117.5 149 41.6
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 9.4e-25 117.5 149 41.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.2e-24 117.1 149 40.9
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.2e-24 117.1 149 40.9
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.2e-24 117.1 149 43.0
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.2e-24 117.1 160 42.5
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.6e-24 116.7 158 42.4
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 1.6e-24 116.7 149 43.0
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 2.1e-24 116.3 147 42.2
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.1e-24 116.3 153 44.4
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 3.6e-24 115.5 140 43.6
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 6.1e-24 114.8 148 43.9
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 8.0e-24 114.4 151 44.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.0e-23 114.0 127 48.8
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.0e-23 114.0 120 44.2
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.0e-23 114.0 147 43.5
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 1.4e-23 113.6 148 42.6
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 2.3e-23 112.8 158 41.1
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 3.0e-23 112.5 119 47.1
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 5.2e-23 111.7 122 47.5
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 6.8e-23 111.3 147 40.8
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 2.6e-22 109.4 158 39.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 4.4e-22 108.6 145 42.1
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 9.8e-22 107.5 150 40.0
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.3e-21 107.1 155 37.4
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 1.3e-21 107.1 157 40.1
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 8.3e-21 104.4 150 37.3
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.1e-20 104.0 136 43.4
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 1.1e-20 104.0 125 43.2
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.8e-20 103.2 150 40.7
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 5.4e-20 101.7 151 39.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.2e-19 100.5 148 39.9
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.9e-18 95.9 144 41.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 8.6e-18 94.4 149 38.9
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 3.3e-17 92.4 141 39.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.2e-17 92.0 143 42.7
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.1e-16 89.7 158 37.3
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.8e-15 86.7 135 38.5
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 7.5e-14 81.3 136 39.0
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 4.1e-12 75.5 141 34.0
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 5.4e-12 75.1 141 34.0
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-11 72.8 118 40.7
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 2.7e-11 72.8 96 41.7
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.5e-09 66.2 133 31.6
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 7.3e-09 64.7 66 50.0
ATR0824G191 Amborella trichopoda HOM05D007082 ORTHO05D066697 8.9e-07 57.8 60 58.3
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.6e-06 56.2 122 27.0


User provided reference genes

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