Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 0.0e+00 1384.4 707 100.0
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.7e-295 1017.3 710 73.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.4e-293 1011.9 718 72.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.6e-292 1008.4 710 73.1
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.7e-291 1005.7 710 73.1
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 2.9e-291 1005.0 710 72.4
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.0e-288 995.0 710 72.0
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 3.1e-285 984.9 670 74.0
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.5e-284 981.1 694 73.2
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.1e-282 976.5 712 70.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.1e-282 976.5 714 70.2
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.4e-282 976.1 709 70.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 3.2e-282 974.9 706 71.0
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.5e-282 974.2 709 70.5
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.6e-281 972.6 702 69.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.6e-281 972.6 708 70.2
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 2.1e-281 972.2 706 69.8
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 2.7e-281 971.8 709 70.8
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 6.1e-281 970.7 708 70.2
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.1e-279 966.5 712 69.9
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.5e-279 966.1 714 70.0
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.0e-279 965.7 715 70.1
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.0e-279 965.7 713 69.4
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 7.4e-279 963.8 713 69.6
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 7.4e-279 963.8 713 69.7
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 9.7e-279 963.4 707 68.9
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.3e-278 963.0 704 69.6
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.2e-278 962.2 714 68.8
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 4.8e-278 961.1 709 69.3
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 6.3e-278 960.7 710 71.1
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 6.3e-278 960.7 710 70.6
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.4e-277 958.7 717 69.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 3.1e-277 958.4 707 68.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 4.1e-277 958.0 716 68.9
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 4.1e-277 958.0 712 70.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 7.0e-277 957.2 710 69.7
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 7.0e-277 957.2 710 69.6
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.1e-277 956.8 709 69.4
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.2e-276 956.4 711 68.6
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.2e-276 956.4 710 68.9
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 4.5e-276 954.5 711 68.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 5.9e-276 954.1 709 68.8
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 5.9e-276 954.1 693 70.3
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.3e-275 953.0 716 68.2
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 2.9e-275 951.8 710 68.9
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 3.8e-275 951.4 713 68.0
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 5.0e-275 951.0 716 69.1
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 3.2e-274 948.3 694 71.6
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 3.2e-274 948.3 710 68.9
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 9.4e-274 946.8 720 68.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.6e-273 946.0 717 68.6
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 3.6e-273 944.9 714 68.6
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 8.0e-273 943.7 708 68.5
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.8e-272 942.6 707 69.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 2.3e-272 942.2 713 67.7
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 4.0e-272 941.4 707 67.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 4.0e-272 941.4 706 68.6
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.2e-272 941.0 723 68.6
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 5.2e-272 941.0 713 68.4
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.7e-272 940.6 718 68.4
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.2e-271 939.9 715 69.1
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.2e-271 939.9 708 68.8
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.0e-271 939.1 716 68.0
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 5.7e-271 937.6 706 69.0
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 9.7e-271 936.8 714 68.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 2.2e-270 935.6 718 68.2
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.2e-270 935.6 716 67.9
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 4.8e-270 934.5 718 68.1
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 4.8e-270 934.5 746 64.9
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 6.3e-270 934.1 708 68.5
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 8.2e-270 933.7 708 68.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.4e-269 932.9 712 68.7
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.8e-269 932.6 757 64.9
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.4e-269 932.2 711 67.9
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.4e-269 932.2 718 68.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.6e-268 929.5 712 68.1
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.3e-267 926.4 712 68.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.2e-267 925.6 734 65.9
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 3.2e-266 921.8 709 67.6
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 3.2e-266 921.8 708 67.8
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.2e-266 921.8 659 71.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.1e-265 919.1 740 65.4
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 4.0e-264 914.8 730 65.5
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.7e-262 909.4 705 65.7
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.8e-262 908.7 661 70.5
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.8e-259 898.3 792 60.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.9e-258 896.0 718 66.6
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.5e-258 895.6 718 66.0
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 3.6e-257 891.7 659 70.3
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.7e-252 875.5 712 65.0
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 9.2e-245 850.5 659 66.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.6e-239 832.4 712 61.0
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 4.4e-239 831.6 706 63.5
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 3.3e-234 815.5 712 59.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.7e-219 766.5 541 71.7
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.0e-216 754.2 714 58.5
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.5e-210 736.9 511 74.8
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.1e-196 689.9 514 68.9
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.2e-189 665.6 517 67.3
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 4.8e-185 652.1 572 60.7
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-176 623.2 515 64.3
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.5e-175 620.5 620 52.4
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.7e-148 529.3 648 48.9
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 5.7e-146 522.3 407 65.6
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 6.3e-145 518.8 364 72.0
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.3e-139 500.4 386 66.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 9.8e-138 495.0 383 66.1
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.6e-124 449.9 375 63.2
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.7e-121 441.0 383 60.1
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.4e-120 438.0 382 58.6
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.3e-118 431.4 370 61.6
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.6e-117 426.0 370 61.1
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 7.1e-112 409.1 497 49.1
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 6.0e-111 406.0 356 59.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 4.9e-97 359.8 224 79.9
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 3.4e-90 337.0 261 69.7
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.8e-86 324.7 202 78.2
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.5e-66 258.5 231 59.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 1.0e-65 255.8 160 80.0
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 5.5e-64 250.0 168 73.8
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 2.3e-54 218.0 139 79.9
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 5.7e-53 213.4 142 71.8
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 4.1e-51 207.2 156 65.4
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.5e-48 196.8 131 76.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 9.4e-48 196.1 295 41.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 3.1e-43 181.0 312 41.7
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.2e-42 179.1 117 74.4
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 5.0e-41 173.7 312 36.5
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 6.5e-41 173.3 107 82.2
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.5e-40 172.2 95 86.3
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.8e-36 157.9 93 82.8
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.9e-32 145.2 131 60.3
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.2e-32 144.1 167 47.3
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.0e-30 139.4 150 49.3
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.8e-28 131.3 81 75.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.5e-26 124.4 86 72.1
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-20 105.9 111 47.7
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 4.9e-20 104.0 132 44.7
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.4e-19 102.4 71 73.2
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 5.6e-16 90.5 53 83.0
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.2e-15 89.4 58 65.5
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 4.7e-15 87.4 52 76.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.4e-14 85.9 58 62.1
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 5.2e-14 84.0 125 38.4
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 8.9e-14 83.2 52 73.1
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 3.7e-12 77.8 89 49.4
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.1e-11 76.3 79 49.4
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.0e-09 69.7 44 72.7
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.0e-09 69.7 73 52.1
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.6e-09 66.6 41 80.5
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 6.8e-06 57.0 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 6.8e-06 57.0 29 93.1


User provided reference genes

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