Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.0e-146 520.8 254 100.0
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.2e-77 293.9 322 53.1
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 4.4e-56 222.2 309 43.7
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.6e-53 212.2 290 42.1
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-52 210.7 300 41.7
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 3.0e-52 209.5 215 51.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 5.0e-52 208.8 239 50.2
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 3.3e-51 206.1 312 42.9
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 3.3e-51 206.1 315 41.3
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.3e-51 205.7 304 43.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 9.5e-51 204.5 312 41.3
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 9.5e-51 204.5 313 39.9
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.2e-50 204.1 315 41.0
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.8e-49 200.3 304 41.8
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.0e-49 199.1 300 42.3
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 5.2e-49 198.7 308 40.6
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.6e-48 196.4 300 42.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 3.4e-48 196.1 292 42.1
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 3.4e-48 196.1 307 42.3
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 3.4e-48 196.1 308 39.6
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 4.4e-48 195.7 314 39.8
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.5e-48 194.9 299 41.1
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 7.5e-48 194.9 313 39.9
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.8e-48 194.5 292 41.8
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 9.8e-48 194.5 306 40.2
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 8.3e-47 191.4 292 42.8
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.1e-46 191.0 313 39.9
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.4e-46 190.7 298 40.9
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.9e-46 190.3 309 38.8
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 7.0e-46 188.3 179 56.4
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 9.2e-46 188.0 286 44.1
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-45 187.2 204 51.5
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.5e-45 186.0 312 38.8
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 4.6e-45 185.7 164 57.9
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.6e-45 185.7 302 40.7
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 4.6e-45 185.7 289 42.2
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.7e-44 183.7 309 38.5
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.3e-44 183.3 304 40.1
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 3.9e-44 182.6 231 47.2
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 3.9e-44 182.6 196 53.6
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-43 181.0 198 52.5
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.5e-43 180.6 325 37.5
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.9e-43 180.3 307 39.1
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.5e-43 179.9 288 42.4
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 7.3e-43 178.3 289 39.8
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 9.5e-43 177.9 313 36.1
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 9.5e-43 177.9 305 40.3
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.6e-42 177.2 309 39.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.6e-42 177.2 309 39.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 2.8e-42 176.4 316 35.8
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 6.2e-42 175.3 200 50.5
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.1e-41 174.5 309 39.5
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.8e-41 173.7 164 54.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 1.8e-41 173.7 304 38.2
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 3.1e-41 172.9 310 36.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 3.1e-41 172.9 310 38.7
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 4.0e-41 172.6 280 41.8
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 6.8e-41 171.8 201 48.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 6.8e-41 171.8 310 36.1
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.5e-40 170.6 205 49.3
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 2.6e-40 169.9 175 52.0
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.3e-39 167.5 238 44.5
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.7e-39 167.2 339 36.9
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.7e-39 167.2 209 47.4
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 2.2e-39 166.8 295 40.0
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.9e-39 166.4 278 39.9
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 3.7e-39 166.0 199 49.7
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 4.9e-39 165.6 345 33.6
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.1e-38 164.5 199 48.2
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 4.1e-38 162.5 159 51.6
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 5.4e-38 162.2 282 38.3
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 9.2e-38 161.4 305 36.4
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.6e-37 160.6 304 39.1
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 2.7e-37 159.8 154 52.6
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 2.7e-37 159.8 272 41.2
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 6.0e-37 158.7 277 37.9
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 6.0e-37 158.7 190 47.4
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.0e-36 157.9 159 53.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.7e-36 157.1 190 50.0
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 5.1e-36 155.6 191 47.1
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.1e-35 154.5 302 38.1
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.9e-35 153.7 212 43.9
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.9e-35 153.7 141 57.4
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.3e-35 152.5 308 34.7
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 9.5e-35 151.4 188 47.9
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.8e-34 149.8 269 40.5
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.1e-33 147.9 188 46.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.4e-33 147.5 188 46.8
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 3.1e-33 146.4 225 42.7
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 5.2e-33 145.6 266 38.7
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 6.8e-33 145.2 188 46.8
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 8.9e-33 144.8 191 44.5
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.2e-32 144.4 227 42.7
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.5e-32 144.1 228 41.2
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.4e-32 142.9 193 43.5
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.3e-31 141.0 266 41.0
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.4e-30 137.5 303 34.0
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.2e-29 134.4 241 38.2
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.6e-29 134.0 287 35.2
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.5e-29 132.9 154 48.1
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.5e-29 132.9 154 48.1
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 6.0e-29 132.1 237 38.4
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 6.0e-29 132.1 192 44.8
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 7.8e-29 131.7 260 38.1
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 2.5e-27 126.7 259 38.6
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.8e-26 123.2 142 49.3
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 6.9e-25 118.6 197 41.6
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-24 117.1 196 41.8
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 2.6e-24 116.7 249 35.7
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 2.6e-24 116.7 237 38.0
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 9.9e-24 114.8 255 37.3
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.2e-23 113.6 196 41.3
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 2.2e-23 113.6 196 41.3
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.8e-23 112.8 188 41.0
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 6.4e-23 112.1 261 36.0
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.6e-21 107.5 149 45.0
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.3e-18 97.8 109 46.8
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 6.2e-18 95.5 80 51.2
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-17 94.7 108 50.9
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.8e-17 94.0 113 50.4
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.6e-16 90.1 124 40.3
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 3.4e-16 89.7 152 38.8
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.3e-15 87.8 152 38.8
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 6.4e-15 85.5 227 29.5
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-14 84.7 114 47.4
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.4e-14 82.4 114 47.4
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.6e-13 80.9 137 41.6
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.7e-13 80.1 115 41.7
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-13 79.7 110 42.7
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-13 79.7 107 47.7
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-13 79.3 110 40.9
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 6.0e-13 79.0 112 42.9
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 7.9e-13 78.6 111 43.2
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 7.9e-13 78.6 111 39.6
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 7.9e-13 78.6 111 39.6
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.9e-13 78.6 111 39.6
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 7.9e-13 78.6 178 38.2
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-12 78.2 111 40.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-12 77.4 114 45.6
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-12 77.4 113 43.4
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-12 77.4 113 43.4
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-12 77.4 83 49.4
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 2.3e-12 77.0 86 50.0
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.6e-10 69.7 72 47.2
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 5.3e-09 65.9 46 52.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.2e-08 64.7 34 76.5
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.4e-07 58.5 51 51.0
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 3.2e-06 56.6 46 47.8


User provided reference genes

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