Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G275 Amborella trichopoda HOM05D003914 ORTHO05D001189 2.0e-250 868.6 428 100.0
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 2.3e-182 642.5 457 74.6
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 3.9e-129 465.7 459 54.0
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 5.0e-129 465.3 456 53.9
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 1.5e-128 463.8 456 52.4
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 3.4e-125 452.6 457 53.0
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 4.9e-124 448.7 457 52.3
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 1.1e-123 447.6 457 51.6
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 1.0e-121 441.0 457 52.5
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 2.3e-121 439.9 461 50.8
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 5.0e-121 438.7 457 51.6
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 6.6e-121 438.3 459 50.1
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 4.3e-120 435.6 459 51.2
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 2.3e-118 429.9 459 50.5
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 3.1e-118 429.5 457 50.3
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 4.0e-118 429.1 459 50.1
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 5.2e-118 428.7 459 50.1
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 5.2e-118 428.7 457 50.3
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 6.8e-118 428.3 457 49.7
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 8.9e-118 427.9 457 49.7
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 1.5e-117 427.2 457 49.5
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 2.0e-117 426.8 457 49.5
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 2.6e-117 426.4 457 51.2
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 5.8e-117 425.2 457 49.2
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 5.8e-117 425.2 457 51.4
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 7.5e-117 424.9 457 50.5
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 7.5e-117 424.9 459 49.7
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 2.2e-116 423.3 461 48.6
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 3.7e-116 422.5 457 49.9
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 6.4e-116 421.8 457 49.2
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 1.9e-115 420.2 457 49.9
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 2.4e-115 419.9 457 49.2
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.4e-115 419.9 464 48.3
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 9.2e-115 417.9 457 49.5
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 2.1e-114 416.8 452 50.0
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 2.7e-114 416.4 457 50.1
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 4.6e-114 415.6 464 48.1
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 4.6e-114 415.6 464 48.1
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 6.0e-114 415.2 457 51.0
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 1.3e-113 414.1 457 50.3
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 6.6e-113 411.8 457 48.6
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 1.5e-112 410.6 459 49.0
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 1.9e-112 410.2 458 48.5
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 2.5e-112 409.8 457 48.8
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 3.3e-112 409.5 457 48.4
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 4.3e-112 409.1 457 47.9
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 7.3e-112 408.3 440 47.7
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 7.3e-112 408.3 458 48.0
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 1.2e-111 407.5 457 48.1
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 2.1e-111 406.8 457 47.5
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 6.2e-111 405.2 457 47.7
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 8.1e-111 404.8 425 50.8
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 8.1e-111 404.8 457 48.4
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 1.1e-110 404.4 459 47.1
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 1.8e-110 403.7 461 47.3
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 3.1e-110 402.9 457 47.9
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 6.8e-110 401.7 457 46.8
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 8.9e-110 401.4 454 47.8
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.5e-109 400.6 430 49.8
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 2.0e-109 400.2 459 49.0
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 3.4e-109 399.4 457 47.5
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 5.8e-109 398.7 459 48.1
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 6.4e-108 395.2 457 48.6
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 8.3e-108 394.8 461 47.5
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 8.3e-108 394.8 456 46.9
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 4.1e-107 392.5 457 46.2
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 2.7e-106 389.8 475 45.7
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 6.0e-106 388.7 441 47.4
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 7.8e-106 388.3 457 47.5
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 1.0e-105 387.9 457 45.7
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 1.7e-105 387.1 443 47.0
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 1.7e-105 387.1 443 47.0
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 2.3e-105 386.7 457 45.7
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 3.9e-105 386.0 457 47.7
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 3.9e-105 386.0 459 48.8
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 5.1e-105 385.6 457 46.4
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 8.6e-105 384.8 457 47.0
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 1.5e-104 384.0 457 46.2
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 7.3e-104 381.7 457 45.5
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 1.2e-103 380.9 466 47.9
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 2.8e-103 379.8 457 44.4
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 3.6e-103 379.4 457 46.8
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 3.6e-103 379.4 457 46.6
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 1.1e-102 377.9 462 45.7
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 1.8e-102 377.1 458 46.5
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 3.1e-102 376.3 457 46.2
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 6.8e-102 375.2 464 47.4
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 1.2e-101 374.4 457 46.4
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.0e-101 373.6 457 46.4
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.4e-101 372.9 457 46.4
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 4.4e-101 372.5 457 45.5
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.4e-101 372.5 457 45.3
Oeu008404.1 Olea europaea HOM05D003914 ORTHO05D001189 7.6e-101 371.7 458 46.1
Cpa.g.sc2.93 Carica papaya HOM05D003914 ORTHO05D001189 1.7e-100 370.5 414 49.8
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 2.2e-100 370.2 457 45.3
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 2.2e-100 370.2 457 46.0
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 2.2e-100 370.2 457 46.0
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 6.0e-98 362.1 454 45.6
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 7.8e-98 361.7 464 45.7
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.0e-97 361.3 464 43.8
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 2.3e-97 360.1 457 44.9
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 2.3e-97 360.1 457 44.9
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 7.3e-96 355.1 454 44.9
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 2.0e-93 347.1 330 53.0
Actinidia18235 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.9e-88 330.5 320 51.6
MD16G1257100 Malus domestica HOM05D003914 ORTHO05D001189 5.8e-85 318.9 425 42.6
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 8.4e-84 315.1 420 41.7
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 9.3e-75 285.0 459 37.7
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 1.6e-74 284.3 467 38.3
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 7.1e-67 258.8 242 51.7
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.6e-66 256.1 381 39.9
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 1.8e-65 254.2 455 35.8
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 4.8e-63 246.1 457 34.8
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 4.4e-48 196.4 179 51.4
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 1.2e-42 178.3 132 62.9
Zm00001eb206280 Zea mays HOM05D003914 ORTHO05D001189 1.5e-40 171.4 208 42.8
unitig_61.g26230 Utricularia gibba HOM05D003914 ORTHO05D001189 1.1e-38 165.2 250 38.0
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 3.1e-38 163.7 127 61.4
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 4.1e-38 163.3 485 27.2
Zm00001eb386800 Zea mays HOM05D003914 ORTHO05D001189 1.8e-33 147.9 104 61.5
Atru.chr10.2395 Acer truncatum HOM05D003914 ORTHO05D001189 1.5e-24 118.2 164 42.7
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 8.3e-23 112.5 179 36.9
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 1.2e-21 108.6 183 37.2
HPP92_024664 Vanilla planifolia HOM05D003914 ORTHO05D001189 2.3e-20 104.4 130 37.7
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.1e-14 85.5 153 37.3
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.1e-14 83.6 174 35.6
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.1e-14 83.6 174 37.4
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.3e-12 78.6 52 63.5
FAN25G0399 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.5e-08 65.1 69 49.3
FAN02G0445 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.0e-08 64.7 69 47.8
FAN12G2419 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.0e-08 64.7 69 47.8
FAN15G1664 Fragaria x ananassa HOM05D003914 ORTHO05D001189 5.8e-08 63.2 69 46.4
Cre02.g086887 Chlamydomonas reinhardtii HOM05D003914 ORTHO05D001189 1.7e-07 61.6 88 37.5


User provided reference genes

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