Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 8.8e-171 603.6 319 100.0
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.0e-106 389.8 228 82.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.1e-104 384.0 229 79.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.2e-104 382.1 225 83.1
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.1e-103 379.8 223 81.2
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.1e-102 375.2 227 78.9
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 6.7e-102 374.8 227 78.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.9e-101 373.2 227 79.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 4.3e-101 372.1 227 79.3
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 4.3e-101 372.1 229 79.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 5.6e-101 371.7 227 77.1
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 5.6e-101 371.7 227 78.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.4e-101 371.3 227 78.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 9.6e-101 370.9 227 78.4
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.6e-100 370.2 227 78.0
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.8e-100 369.4 227 78.4
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.7e-100 369.0 228 78.9
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.2e-100 368.2 228 78.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.1e-100 367.9 227 78.4
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-99 367.5 228 78.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.1e-99 367.5 227 77.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.1e-99 367.5 227 77.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.4e-99 367.1 229 79.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.4e-99 366.3 227 77.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.4e-99 366.3 225 79.1
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.1e-99 365.9 228 77.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.9e-99 364.8 227 77.5
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.0e-99 364.4 225 78.7
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 9.0e-99 364.4 227 77.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.2e-98 364.0 226 77.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.6e-98 362.8 227 77.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.4e-98 362.5 227 76.7
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.4e-98 362.5 229 75.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.0e-97 360.9 226 78.3
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.0e-97 360.9 225 78.2
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.2e-97 359.8 229 75.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.2e-97 359.8 224 77.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.8e-97 359.0 225 76.4
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.8e-97 359.0 227 76.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.8e-97 359.0 223 76.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.9e-97 358.6 224 76.3
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 6.5e-97 358.2 225 77.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 8.4e-97 357.8 226 76.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 8.4e-97 357.8 227 77.1
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.4e-97 357.8 223 76.7
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 8.4e-97 357.8 227 77.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.1e-96 357.5 227 75.3
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.5e-96 356.3 223 77.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.5e-96 356.3 259 68.7
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.2e-96 355.9 226 74.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.2e-96 355.9 226 74.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 5.5e-96 355.1 241 72.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 7.1e-96 354.8 227 74.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 7.1e-96 354.8 228 76.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.2e-95 354.0 225 75.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.2e-95 354.0 225 75.1
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.1e-95 353.2 227 74.0
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.0e-95 351.7 227 73.1
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.0e-95 351.7 261 67.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 7.9e-95 351.3 227 73.6
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.0e-94 350.9 225 75.6
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.3e-94 350.5 221 76.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.8e-94 350.1 225 76.9
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.3e-94 349.7 256 69.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.1e-93 347.4 227 72.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-93 347.1 226 75.2
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-93 346.3 229 71.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 5.7e-93 345.1 226 74.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.6e-92 343.6 225 72.9
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-92 343.2 226 74.3
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.7e-92 342.4 229 72.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.1e-91 340.9 229 73.4
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.4e-91 340.5 222 73.9
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.8e-91 340.1 227 71.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.2e-90 337.4 221 72.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.2e-90 337.4 221 72.4
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.0e-90 336.7 225 71.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.6e-90 336.3 227 72.2
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.6e-90 336.3 229 73.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.4e-90 335.9 227 72.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.5e-90 335.5 229 72.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.8e-90 335.1 229 72.1
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 5.8e-90 335.1 227 70.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.0e-89 334.3 226 69.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.3e-89 334.0 227 71.8
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-89 334.0 221 71.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.7e-89 333.6 227 69.2
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.7e-89 333.6 225 72.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.7e-89 333.6 213 75.1
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.9e-89 332.8 227 70.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.9e-89 332.8 220 72.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.8e-89 332.4 209 76.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 5.0e-89 332.0 227 70.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 6.5e-89 331.6 227 72.7
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.4e-88 330.5 266 64.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.9e-88 330.1 229 70.7
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.5e-88 329.7 212 74.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.6e-87 327.0 226 69.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-86 324.3 239 66.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-86 323.6 191 83.2
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.3e-86 323.2 241 66.0
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-86 322.8 229 68.6
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 3.9e-86 322.4 205 75.6
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 3.9e-86 322.4 205 75.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 6.7e-86 321.6 205 75.6
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 6.7e-86 321.6 205 75.6
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.9e-85 320.1 214 72.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.9e-85 320.1 203 73.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 9.7e-85 317.8 212 71.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.2e-84 316.6 221 67.9
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-83 313.9 227 67.8
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 9.0e-83 311.2 227 69.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.4e-82 309.3 219 68.9
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 5.9e-82 308.5 228 68.0
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-81 307.0 227 67.0
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-81 307.0 227 67.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.5e-80 303.1 227 67.0
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 9.4e-80 301.2 297 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.1e-78 295.4 191 75.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 6.3e-76 288.5 229 61.1
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.6e-74 283.1 195 72.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 5.9e-74 282.0 230 63.0
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.5e-72 276.6 173 76.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 5.7e-69 265.4 203 62.6
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 8.2e-68 261.5 173 71.1
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 9.1e-67 258.1 222 58.1
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.5e-65 251.5 227 57.3
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 8.0e-63 245.0 173 68.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.0e-62 242.7 232 55.2
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 8.8e-62 241.5 227 57.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.3e-60 237.7 222 54.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.2e-60 235.0 227 55.9
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 5.9e-58 228.8 143 74.1
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.0e-50 203.8 138 75.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 6.8e-46 188.7 135 72.6
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 6.8e-46 188.7 135 72.6
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 6.8e-46 188.7 135 72.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.4e-43 181.0 105 84.8
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-41 174.5 108 78.7
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.0e-41 172.6 175 51.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.0e-38 164.9 149 58.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.4e-36 155.6 154 57.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 8.3e-36 155.2 194 43.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.8e-35 154.1 154 56.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.8e-35 154.1 154 56.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 5.0e-33 146.0 84 88.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.9e-25 119.8 73 78.1
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.9e-25 119.8 73 78.1
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.5e-24 117.9 72 77.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.0e-21 107.5 82 58.5
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 4.4e-21 106.3 76 67.1
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 9.8e-21 105.1 95 62.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.9e-20 103.6 59 78.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.2e-18 98.2 132 43.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.1e-17 92.8 262 30.9
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.6e-15 87.8 60 61.7
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-14 84.7 86 46.5
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 4.9e-12 76.3 59 64.4
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.4e-11 74.7 58 69.0
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.1e-10 70.9 84 44.0
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 6.8e-06 55.8 36 75.0


User provided reference genes

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