Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G080 Amborella trichopoda HOM05D005653 ORTHO05D007013 8.1e-100 367.1 185 100.0
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 3.1e-75 285.4 179 75.4
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 5.3e-75 284.6 179 74.3
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 5.3e-75 284.6 179 74.3
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 1.2e-74 283.5 179 75.4
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 1.5e-74 283.1 179 74.3
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 3.4e-74 282.0 177 76.3
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 4.5e-74 281.6 179 75.4
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 4.5e-74 281.6 179 74.9
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.5e-74 281.6 179 76.0
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 5.8e-74 281.2 179 74.3
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 7.6e-74 280.8 171 77.8
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 9.9e-74 280.4 179 75.4
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 1.3e-73 280.0 179 74.3
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 1.7e-73 279.6 179 72.6
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.7e-73 279.6 179 72.6
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 1.7e-73 279.6 179 74.3
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 2.2e-73 279.3 179 72.6
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 2.2e-73 279.3 179 74.3
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 2.2e-73 279.3 179 73.7
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 2.2e-73 279.3 179 73.7
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 4.9e-73 278.1 179 73.7
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 4.9e-73 278.1 179 72.1
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 4.9e-73 278.1 179 73.7
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 6.4e-73 277.7 177 72.3
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 6.4e-73 277.7 179 71.5
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 6.4e-73 277.7 179 73.2
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 8.4e-73 277.3 175 72.6
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 8.4e-73 277.3 179 72.6
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 1.4e-72 276.6 179 73.7
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 1.4e-72 276.6 179 73.7
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.4e-72 276.6 179 74.9
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.9e-72 276.2 179 72.6
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.4e-72 275.8 179 71.5
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 2.4e-72 275.8 179 72.6
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 2.4e-72 275.8 179 73.7
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 2.4e-72 275.8 179 73.2
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 3.2e-72 275.4 179 72.6
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 3.2e-72 275.4 179 73.2
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 4.2e-72 275.0 179 73.7
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 4.2e-72 275.0 179 72.6
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 72.6
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 72.6
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 73.2
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 73.2
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 72.6
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 7.1e-72 274.2 179 72.6
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 9.3e-72 273.9 179 72.1
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 1.2e-71 273.5 179 72.1
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 2.7e-71 272.3 173 75.1
COL.COLO4_05009 Corchorus olitorius HOM05D005653 ORTHO05D007013 2.7e-71 272.3 171 74.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 2.7e-71 272.3 179 72.6
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 3.5e-71 271.9 177 71.2
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 3.5e-71 271.9 171 75.4
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 3.5e-71 271.9 179 72.1
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 6.0e-71 271.2 179 71.5
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 7.9e-71 270.8 179 72.1
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 7.9e-71 270.8 179 71.5
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 7.9e-71 270.8 179 70.9
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 1.0e-70 270.4 179 72.1
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 1.0e-70 270.4 179 70.9
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 1.3e-70 270.0 171 72.5
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 1.8e-70 269.6 179 70.4
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 2.3e-70 269.2 176 70.5
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 2.3e-70 269.2 176 70.5
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 2.3e-70 269.2 176 70.5
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 3.0e-70 268.9 176 71.0
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 3.0e-70 268.9 197 66.0
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 3.9e-70 268.5 176 71.0
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 3.9e-70 268.5 179 72.6
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 5.1e-70 268.1 179 67.6
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 5.1e-70 268.1 179 72.6
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 6.7e-70 267.7 169 74.0
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 6.7e-70 267.7 176 68.8
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 1.1e-69 266.9 173 72.3
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.1e-69 266.9 179 69.8
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 1.5e-69 266.5 176 69.3
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.9e-69 266.2 176 69.9
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 1.9e-69 266.2 179 70.9
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 3.3e-69 265.4 176 73.3
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 3.3e-69 265.4 176 69.3
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 4.3e-69 265.0 173 71.7
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 4.3e-69 265.0 175 69.7
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 4.3e-69 265.0 182 69.2
CAN.G789.3 Capsicum annuum HOM05D005653 ORTHO05D007013 5.6e-69 264.6 173 71.1
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 5.6e-69 264.6 171 71.3
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 2.8e-68 262.3 179 70.4
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 2.2e-65 252.7 206 60.7
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 3.0e-62 242.3 213 58.7
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 1.9e-61 239.6 163 67.5
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 4.3e-61 238.4 179 63.7
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 3.1e-59 232.3 171 63.7
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 3.4e-58 228.8 177 61.0
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 1.3e-57 226.9 179 63.7
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 1.7e-57 226.5 205 56.1
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 2.5e-56 222.6 179 62.6
SGA_v2.0_scaffold46G17390 Striga asiatica HOM05D005653 ORTHO05D007013 4.6e-55 218.4 153 68.6
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 8.7e-54 214.2 133 70.7
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 6.5e-49 198.0 169 54.4
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 2.5e-45 186.0 172 51.2
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 1.4e-32 143.7 170 42.9
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 4.2e-32 142.1 181 40.9
Haze_26914 Corylus avellana HOM05D005653 ORTHO05D007013 9.4e-32 141.0 168 39.3
Cre03.g155051 Chlamydomonas reinhardtii HOM05D005653 ORTHO05D007013 2.0e-29 133.3 178 36.5
Potri.001G059001 Populus trichocarpa HOM05D005653 ORTHO05D007013 1.2e-21 107.5 75 64.0
Nn1g00005 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.8e-19 100.1 58 77.6
Nn1g02921 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.8e-19 100.1 58 77.6
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 1.9e-16 90.1 63 69.8
MELO3C032670.2 Cucumis melo HOM05D011747 ORTHO05D007013 2.3e-14 83.2 51 72.5
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 9.8e-13 77.8 83 50.6
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 1.2e-10 70.9 137 38.7
Actinidia18467 Actinidia chinensis HOM05D005653 ORTHO05D007013 8.6e-09 64.7 90 41.1
CARHR035100 Cardamine hirsuta HOM05D005653 ORTHO05D007013 8.0e-07 58.2 34 82.4
BolC5t31379H Brassica oleracea HOM05D005653 ORTHO05D007013 3.0e-06 56.2 39 71.8
Actinidia40343 Actinidia chinensis HOM05D000263 ORTHO05D010929 5.2e-06 55.5 42 57.1


User provided reference genes

Program Settings