Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 2.3e-174 616.7 742 100.0
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.1e-86 325.5 257 72.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.6e-85 321.6 270 66.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.9e-85 319.7 270 65.9
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.5e-84 316.2 208 79.3
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 6.5e-84 316.2 210 79.5
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.5e-83 315.1 207 78.3
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.9e-83 314.7 212 75.9
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 7.2e-83 312.8 217 74.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-82 312.0 207 77.3
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-82 312.0 207 77.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.2e-82 312.0 225 74.7
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.2e-82 312.0 210 78.6
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.1e-82 311.2 217 75.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 4.7e-82 310.1 219 73.5
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.7e-82 310.1 207 76.8
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.7e-82 310.1 210 76.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 8.0e-82 309.3 207 76.3
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 8.0e-82 309.3 207 76.8
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 8.0e-82 309.3 207 78.3
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.4e-81 308.5 216 75.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.8e-81 308.1 213 76.1
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.8e-81 308.1 207 77.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.0e-81 307.0 206 75.7
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.2e-81 306.6 214 74.8
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 6.8e-81 306.2 213 75.6
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 6.8e-81 306.2 207 75.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 8.8e-81 305.8 206 76.7
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 8.8e-81 305.8 201 78.1
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.2e-80 305.4 206 75.7
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.5e-80 305.1 207 76.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 5.7e-80 303.1 216 74.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 5.7e-80 303.1 206 74.8
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 7.5e-80 302.8 206 76.2
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 9.8e-80 302.4 297 59.6
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 9.8e-80 302.4 204 77.0
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.3e-79 302.0 206 74.8
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.3e-79 302.0 207 75.4
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.7e-79 301.6 206 75.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.7e-79 301.6 216 73.1
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-79 301.2 216 73.1
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-79 301.2 216 73.1
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-79 301.2 217 71.9
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-79 301.2 216 73.1
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.2e-79 301.2 207 75.4
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.8e-79 300.8 207 75.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.8e-79 300.8 206 74.8
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.7e-79 300.4 238 66.8
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 6.3e-79 299.7 206 74.8
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 6.3e-79 299.7 209 74.2
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.3e-79 299.3 274 64.2
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.3e-79 299.3 274 64.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 8.3e-79 299.3 256 64.8
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 8.3e-79 299.3 206 74.8
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.1e-78 298.9 265 62.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.4e-78 298.5 216 70.8
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.4e-78 297.7 223 70.9
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.4e-78 297.7 199 76.4
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.1e-78 297.4 216 72.2
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.1e-78 297.4 266 63.5
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 4.1e-78 297.0 216 70.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.1e-78 297.0 200 76.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 4.1e-78 297.0 218 72.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 7.0e-78 296.2 206 74.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 7.0e-78 296.2 262 63.7
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 7.0e-78 296.2 258 65.1
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 9.1e-78 295.8 239 66.9
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 9.1e-78 295.8 270 62.6
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.2e-77 295.4 199 75.9
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.6e-77 295.0 216 70.4
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.6e-77 295.0 201 74.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.7e-77 294.3 266 62.8
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 3.5e-77 293.9 216 69.4
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 4.5e-77 293.5 275 61.8
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 5.9e-77 293.1 206 73.3
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 7.7e-77 292.7 206 72.8
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.0e-76 292.4 201 73.6
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.3e-76 292.0 207 72.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.3e-76 291.2 200 74.5
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 3.8e-76 290.4 196 76.5
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 5.0e-76 290.0 207 73.9
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 8.6e-76 289.3 201 73.1
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 8.6e-76 289.3 201 73.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.1e-75 288.9 257 62.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.5e-75 287.7 194 79.9
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.3e-75 287.3 216 70.4
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.1e-74 284.6 202 73.8
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.8e-73 281.6 241 68.0
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 8.9e-73 279.3 193 73.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.4e-72 277.3 193 74.6
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 4.4e-72 276.9 199 71.4
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.3e-71 275.4 250 62.4
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.9e-71 274.2 201 73.1
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.9e-71 274.2 204 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.3e-71 273.1 260 57.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.8e-70 271.6 179 77.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.8e-70 271.6 201 69.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.0e-69 268.1 188 73.4
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.3e-67 260.4 191 70.7
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.9e-65 252.7 264 55.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.0e-60 239.2 203 62.6
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 3.9e-60 237.3 222 60.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 3.6e-58 230.7 164 74.4
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 4.4e-56 223.8 152 77.6
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 7.5e-56 223.0 188 63.3
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 5.1e-52 210.3 241 52.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.6e-50 205.3 169 66.3
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.0e-40 171.8 143 62.2
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 8.7e-28 129.8 178 43.3
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.5e-27 129.0 105 60.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.6e-26 125.6 91 71.4
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 4.5e-24 117.5 103 66.0
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 3.8e-23 114.4 212 34.4
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.6e-21 109.0 124 54.0
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.9e-19 102.1 82 67.1
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.5e-19 101.7 71 71.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 3.7e-18 97.8 64 76.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.4e-17 95.9 73 65.8
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.8e-17 95.5 107 51.4
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.0e-16 92.0 128 46.9
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 3.4e-16 91.3 63 76.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 3.2e-14 84.7 180 33.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-13 82.8 56 71.4
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.7e-13 81.6 74 58.1
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 6.0e-13 80.5 138 33.3
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 6.0e-13 80.5 138 33.3
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.5e-11 75.9 59 62.7
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.8e-10 71.6 52 63.5
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 4.8e-10 70.9 155 33.5
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 8.2e-10 70.1 62 58.1
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 6.5e-07 60.5 61 55.7
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 2.5e-06 58.5 35 77.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 9.3e-06 56.6 35 71.4


User provided reference genes

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