Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0404G002 Amborella trichopoda HOM05D000912 ORTHO05D001232 2.5e-46 188.3 91 100.0
ATR0629G023 Amborella trichopoda HOM05D000912 ORTHO05D001232 7.9e-32 140.2 69 95.7
ATR0341G001 Amborella trichopoda HOM05D000912 ORTHO05D001232 3.0e-31 138.3 69 92.8
ATR0680G214 Amborella trichopoda HOM05D000912 ORTHO05D001232 9.1e-12 73.6 65 56.9
ATR0680G294 Amborella trichopoda HOM05D000912 ORTHO05D001232 1.3e-10 69.7 65 53.8
Carub.0003s1233 Capsella rubella HOM05D000912 ORTHO05D001232 1.6e-08 62.8 64 42.2
Lsat_1_v5_gn_4_131340 Lactuca sativa HOM05D000912 ORTHO05D001232 1.6e-08 62.8 64 39.1
Nn2g12790 Nelumbo nucifera HOM05D000912 ORTHO05D001232 1.6e-08 62.8 64 39.1
Ah.08g218030 Amaranthus hybridus HOM05D000912 ORTHO05D001232 2.7e-08 62.0 64 40.6
ATR0598G184 Amborella trichopoda HOM05D000912 ORTHO05D001232 2.7e-08 62.0 64 40.6
Zm00001eb231830 Zea mays HOM05D000912 ORTHO05D001232 2.7e-08 62.0 65 46.2
Hund05659 Selenicereus undatus HOM05D000912 ORTHO05D001232 3.6e-08 61.6 64 42.2
CARHR017170 Cardamine hirsuta HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 39.1
Ciclev10027674m.g Citrus clementina HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 39.1
ECA232G2502 Erigeron canadensis HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 39.1
Lsat_1_v5_gn_1_24881 Lactuca sativa HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 39.1
SEGI_27102 Sequoiadendron giganteum HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 37.5
TAR383G0770 Trochodendron aralioides HOM05D000912 ORTHO05D001232 4.7e-08 61.2 65 43.1
HPP92_020427 Vanilla planifolia HOM05D000912 ORTHO05D001232 4.7e-08 61.2 64 40.6
AUR62001296 Chenopodium quinoa HOM05D000912 ORTHO05D001232 6.1e-08 60.8 64 40.6
Gorai.010G222100 Gossypium raimondii HOM05D000912 ORTHO05D001232 6.1e-08 60.8 64 42.2
Nn4g23680 Nelumbo nucifera HOM05D000912 ORTHO05D001232 6.1e-08 60.8 65 43.1
Hund18548 Selenicereus undatus HOM05D000912 ORTHO05D001232 6.1e-08 60.8 64 40.6
CAN.G282.75 Capsicum annuum HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 39.1
Cpa.g.sc10.17 Carica papaya HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 39.1
Dinv20312 Davidia involucrata HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 39.1
Lsat_1_v5_gn_2_35201 Lactuca sativa HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 37.5
Lsat_1_v5_gn_6_111241 Lactuca sativa HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 35.9
PSO017G2537 Papaver somniferum HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 40.6
Pp3c12_3460 Physcomitrium patens HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 37.5
PGR102G0551 Punica granatum HOM05D000912 ORTHO05D001232 7.9e-08 60.5 64 40.6
AL3G24680 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 40.6
HanXRQChr09g0266961 Helianthus annuus HOM05D000912 ORTHO05D001232 1.0e-07 60.1 63 38.1
Hma1.2p1_0960F.1_g241630 Hydrangea macrophylla HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 39.1
Oeu036757.1 Olea europaea HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 40.6
Solyc01g008120.4 Solanum lycopersicum HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 39.1
Sopen01g003670 Solanum pennellii HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 39.1
GSVIVG01029442001 Vitis vinifera HOM05D000912 ORTHO05D001232 1.0e-07 60.1 64 39.1
Aqoxy7G02557 Aquilegia oxysepala HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
AT3G12980 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 40.6
BcaC09g48285 Brassica carinata HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
A01p40540 Brassica napus HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
C01p52170 Brassica napus HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
BolC1t05157H Brassica oleracea HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
BraA01t04088Z Brassica rapa HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
AUR62025681 Chenopodium quinoa HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 37.5
Eucgr.F04062 Eucalyptus grandis HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 39.1
Gohir.A06G182500 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 40.6
Gohir.D06G189400 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.4e-07 59.7 64 40.6
Atru.chr3.4082 Acer truncatum HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 40.6
Actinidia21902 Actinidia chinensis HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Actinidia38823 Actinidia chinensis HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
arahy.Tifrunner.gnm1.ann1.DM6RAW Arachis hypogaea HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
arahy.Tifrunner.gnm1.ann1.PZ05LS Arachis hypogaea HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
BcaB04g21025 Brassica carinata HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
CAN.G880.12 Capsicum annuum HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 37.5
ECA247G1226 Erigeron canadensis HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Nitab4.5_0000069g0570 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Nitab4.5_0003699g0060 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Phvul.010G165900 Phaseolus vulgaris HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Sp1g14860 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 39.1
Sp3g11140 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.8e-07 59.3 64 40.6
Cfa002158 Carpinus fangiana HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 37.5
Haze_16248 Corylus avellana HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 37.5
Glyma.07G000400 Glycine max HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
Glyma.08G226700 Glycine max HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
HanXRQChr11g0326491 Helianthus annuus HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 35.9
Lalb_Chr04g0264771 Lupinus albus HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
Manes.14G000600 Manihot esculenta HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
Manes.14G000700 Manihot esculenta HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
Medtr4g005050 Medicago truncatula HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
TAR636G0354 Trochodendron aralioides HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 35.9
VMungo0331G0786 Vigna mungo HOM05D000912 ORTHO05D001232 2.3e-07 58.9 64 39.1
Actinidia00648 Actinidia chinensis HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 40.6
Aa31LG8G230 Aethionema arabicum HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 35.9
Aqoxy7G02531 Aquilegia oxysepala HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 34.4
CARHR087520 Cardamine hirsuta HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 40.6
COL.COLO4_26805 Corchorus olitorius HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 40.6
MD17G1157200 Malus domestica HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 39.1
Prupe.3G028200 Prunus persica HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 39.1
QL05p085111 Quercus lobata HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 39.1
Thecc.06G049100 Theobroma cacao HOM05D000912 ORTHO05D001232 3.0e-07 58.5 64 40.6
Zm00001eb209230 Zea mays HOM05D000912 ORTHO05D001232 3.0e-07 58.5 65 43.1
BcaB04g18744 Brassica carinata HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
BcaC05g29219 Brassica carinata HOM05D000912 ORTHO05D021845 3.9e-07 58.2 64 39.1
Ca_03788_v3 Cicer arietinum L. HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
Dinv37769 Davidia involucrata HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
ECA246G3011 Erigeron canadensis HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 35.9
PSO170G3675 Papaver somniferum HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
Psat7g264600 Pisum sativum HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
Solyc04g008610.3 Solanum lycopersicum HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
Sopen04g003770 Solanum pennellii HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
TPR.G38732 Trifolium pratense HOM05D000912 ORTHO05D001232 3.9e-07 58.2 64 39.1
CSS0005184 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D001232 5.1e-07 57.8 64 39.1
CSS0006911 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D001232 5.1e-07 57.8 64 39.1
CANSAT01G3172 Cannabis sativa HOM05D000912 ORTHO05D001232 5.1e-07 57.8 64 39.1
Migut.H01257 Erythranthe guttata HOM05D000912 ORTHO05D001232 5.1e-07 57.8 63 39.7
MBI10_g35801_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D001232 5.1e-07 57.8 66 37.9
SHI05867 Sapria himalayana HOM05D000912 ORTHO05D001232 5.1e-07 57.8 64 39.1
Sed0017205 Sechium edule HOM05D000912 ORTHO05D001232 5.1e-07 57.8 64 39.1
Actinidia31120 Actinidia chinensis HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
DCAR_011706 Daucus carota HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
Gohir.A10G000900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
Gohir.D10G001100 Gossypium hirsutum HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
Gorai.011G001400 Gossypium raimondii HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
HanXRQChr08g0212201 Helianthus annuus HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 34.4
Peaxi162Scf00097g01412 Petunia axillaris HOM05D000912 ORTHO05D001232 6.7e-07 57.4 64 39.1
Ah.15g094210 Amaranthus hybridus HOM05D000912 ORTHO05D001232 8.8e-07 57.0 64 37.5
Peaxi162Scf00329g00813 Petunia axillaris HOM05D000912 ORTHO05D001232 8.8e-07 57.0 64 37.5
unitig_62.g23240 Utricularia gibba HOM05D000912 ORTHO05D001232 8.8e-07 57.0 64 39.1
BcaB02g10789 Brassica carinata HOM05D000912 ORTHO05D001232 1.1e-06 56.6 69 31.9
Thhalv10019887m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FvH4_6g36320 Fragaria vesca HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
Lsat_1_v5_gn_4_85980 Lactuca sativa HOM05D000912 ORTHO05D001232 1.1e-06 56.6 73 34.2
Lj3g0006194 Lotus japonicus HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 35.9
Nitab4.5_0010895g0020 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
Phvul.005G082300 Phaseolus vulgaris HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
Sp1g41590 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.1e-06 56.6 69 30.4
VMungo1080G1388 Vigna mungo HOM05D000912 ORTHO05D001232 1.1e-06 56.6 64 37.5
CiPaw.02G051600 Carya illinoinensis HOM05D000912 ORTHO05D001232 1.5e-06 56.2 63 38.1
Migut.M00129 Erythranthe guttata HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 39.1
Glyma.15G000300 Glycine max HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 37.5
HanXRQChr05g0150621 Helianthus annuus HOM05D000912 ORTHO05D001232 1.5e-06 56.2 63 34.9
Oeu027255.1 Olea europaea HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 39.1
Oeu061990.1 Olea europaea HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 39.1
Rhsim08G0252700 Rhododendron simsii HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 35.9
RcHm_v2.0_Chr2g0148331 Rosa chinensis HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 37.5
SEGI_09479 Sequoiadendron giganteum HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 34.4
SEGI_29442 Sequoiadendron giganteum HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 34.4
vmacro12581 Vaccinium macrocarpon HOM05D000912 ORTHO05D001232 1.5e-06 56.2 64 37.5
MSTRG.6589 Avicennia marina HOM05D000912 ORTHO05D001232 2.6e-06 55.5 64 37.5
Cre03.g189650 Chlamydomonas reinhardtii HOM05D000912 ORTHO05D001232 2.6e-06 55.5 67 37.3
ECA246G0452 Erigeron canadensis HOM05D000912 ORTHO05D001232 2.6e-06 55.5 64 39.1
unitig_0.g720 Utricularia gibba HOM05D000912 ORTHO05D001232 2.6e-06 55.5 69 33.3
SMO228G0113 Selaginella moellendorffii HOM05D000912 ORTHO05D001232 4.4e-06 54.7 65 40.0
SGA_v2.0_scaffold49G18366 Striga asiatica HOM05D000912 ORTHO05D001232 4.4e-06 54.7 64 35.9
Lj7C414G2 Lonicera japonica HOM05D000912 ORTHO05D001232 5.7e-06 54.3 64 35.9
Rhsim03G0000100 Rhododendron simsii HOM05D000912 ORTHO05D001232 5.7e-06 54.3 64 37.5
EL10Ac7g18098 Beta vulgaris HOM05D000912 ORTHO05D001232 7.4e-06 53.9 64 35.9
SMO356G0343 Selaginella moellendorffii HOM05D000912 ORTHO05D001232 7.4e-06 53.9 65 33.8
SGA_v2.0_scaffold181G39745 Striga asiatica HOM05D000912 ORTHO05D001232 9.7e-06 53.5 64 35.9


User provided reference genes

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