Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G045 Amborella trichopoda HOM05D000433 ORTHO05D000443 1.1e-37 159.5 77 100.0
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 3.4e-20 101.3 72 61.1
QL04p006161 Quercus lobata HOM05D000433 ORTHO05D000443 2.2e-19 98.6 78 59.0
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 2.2e-19 98.6 78 59.0
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 5.5e-18 94.0 76 56.6
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 2.1e-17 92.0 70 57.1
Cpa.g.sc125.8 Carica papaya HOM05D000433 ORTHO05D000443 2.7e-17 91.7 76 55.3
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 2.7e-17 91.7 77 55.8
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 2.7e-17 91.7 72 58.3
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 3.6e-17 91.3 78 56.4
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 3.6e-17 91.3 64 62.5
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 6.1e-17 90.5 72 56.9
TPR.G1878 Trifolium pratense HOM05D000433 ORTHO05D000443 7.9e-17 90.1 70 55.7
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 1.0e-16 89.7 78 55.1
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 2.3e-16 88.6 70 54.3
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 3.0e-16 88.2 77 55.8
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 3.0e-16 88.2 78 55.1
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 3.0e-16 88.2 77 51.9
TPR.G29608 Trifolium pratense HOM05D000433 ORTHO05D000443 3.0e-16 88.2 70 57.1
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 3.9e-16 87.8 70 57.1
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 3.9e-16 87.8 77 55.8
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 6.7e-16 87.0 72 56.9
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 6.7e-16 87.0 70 60.0
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 6.7e-16 87.0 73 56.2
QL04p006145 Quercus lobata HOM05D000009 ORTHO05D000008 8.7e-16 86.7 75 58.7
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 1.1e-15 86.3 70 52.9
CSS0012422 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 1.1e-15 86.3 77 48.1
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.1e-15 86.3 73 54.8
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 1.1e-15 86.3 72 58.3
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 1.5e-15 85.9 65 56.9
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 1.9e-15 85.5 65 56.9
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 2.5e-15 85.1 75 52.0
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 2.5e-15 85.1 64 57.8
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 2.5e-15 85.1 75 56.0
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 3.3e-15 84.7 64 57.8
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 3.3e-15 84.7 80 51.2
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 4.3e-15 84.3 83 50.6
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 4.3e-15 84.3 77 54.5
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 4.3e-15 84.3 75 52.0
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 5.7e-15 84.0 78 52.6
Glyma.12G236650 Glycine max HOM05D000433 ORTHO05D000443 7.4e-15 83.6 64 62.5
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 7.4e-15 83.6 64 62.5
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 7.4e-15 83.6 78 55.1
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 7.4e-15 83.6 75 46.7
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 7.4e-15 83.6 82 48.8
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 9.7e-15 83.2 72 51.4
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 9.7e-15 83.2 69 56.5
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 1.3e-14 82.8 72 55.6
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 1.3e-14 82.8 78 55.1
PGR031G0340 Punica granatum HOM05D000433 ORTHO05D000443 1.3e-14 82.8 64 59.4
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 1.6e-14 82.4 78 53.8
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 2.2e-14 82.0 72 52.8
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 2.8e-14 81.6 78 55.1
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 3.7e-14 81.3 75 45.3
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 3.7e-14 81.3 70 57.1
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 6.3e-14 80.5 70 50.0
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 6.3e-14 80.5 62 59.7
Hma1.2p1_0184F.1_g081180 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 6.3e-14 80.5 76 52.6
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 6.3e-14 80.5 68 55.9
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 6.3e-14 80.5 70 58.6
Atru.chr11.2621 Acer truncatum HOM05D000433 ORTHO05D000443 8.2e-14 80.1 78 53.8
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 8.2e-14 80.1 72 52.8
Haze_03196 Corylus avellana HOM05D000433 ORTHO05D000443 8.2e-14 80.1 59 59.3
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 8.2e-14 80.1 70 52.9
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 1.1e-13 79.7 71 50.7
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 1.1e-13 79.7 63 58.7
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 1.1e-13 79.7 64 51.6
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.4e-13 79.3 74 51.4
AUR62023071 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.4e-13 79.3 74 52.7
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 1.4e-13 79.3 69 56.5
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 1.4e-13 79.3 79 48.1
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 1.4e-13 79.3 64 57.8
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 1.8e-13 79.0 63 52.4
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 1.8e-13 79.0 64 54.7
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 2.4e-13 78.6 65 55.4
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 3.1e-13 78.2 75 50.7
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 3.1e-13 78.2 81 46.9
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 3.1e-13 78.2 86 48.8
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 3.1e-13 78.2 78 51.3
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 4.1e-13 77.8 61 60.7
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 5.3e-13 77.4 63 55.6
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.3e-13 77.4 76 50.0
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.3e-13 77.4 63 55.6
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 5.3e-13 77.4 77 44.2
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 5.3e-13 77.4 63 57.1
vmacro13671 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 5.3e-13 77.4 67 56.7
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 6.9e-13 77.0 63 50.8
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 6.9e-13 77.0 75 46.7
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 9.1e-13 76.6 63 60.3
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 9.1e-13 76.6 63 60.3
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 9.1e-13 76.6 63 60.3
Migut.B01292 Erythranthe guttata HOM05D000433 ORTHO05D000443 9.1e-13 76.6 76 55.3
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 9.1e-13 76.6 76 48.7
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 9.1e-13 76.6 72 52.8
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 9.1e-13 76.6 77 45.5
Atru.chr11.2620 Acer truncatum HOM05D000433 ORTHO05D000443 1.2e-12 76.3 78 52.6
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 1.2e-12 76.3 63 60.3
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 1.2e-12 76.3 63 60.3
BraA04t15726Z Brassica rapa HOM05D000433 ORTHO05D000443 1.2e-12 76.3 63 60.3
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 1.5e-12 75.9 74 51.4
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.5e-12 75.9 73 52.1
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 1.5e-12 75.9 69 55.1
Solyc01g087270.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.5e-12 75.9 76 48.7
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 1.5e-12 75.9 64 56.2
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 2.6e-12 75.1 68 52.9
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 2.6e-12 75.1 75 49.3
Lalb_Chr20g0107971 Lupinus albus HOM05D000433 ORTHO05D000443 3.4e-12 74.7 76 51.3
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 3.4e-12 74.7 82 43.9
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 4.5e-12 74.3 63 55.6
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 4.5e-12 74.3 64 54.7
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 4.5e-12 74.3 70 52.9
arahy.Tifrunner.gnm1.ann1.5NX4LW Arachis hypogaea HOM05D000433 ORTHO05D000443 5.9e-12 73.9 63 54.0
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 5.9e-12 73.9 63 54.0
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.9e-12 73.9 76 48.7
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 5.9e-12 73.9 62 56.5
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 5.9e-12 73.9 75 45.3
PGR058G0003 Punica granatum HOM05D000433 ORTHO05D000443 5.9e-12 73.9 75 45.3
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 7.7e-12 73.6 61 55.7
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 7.7e-12 73.6 75 46.7
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 7.7e-12 73.6 75 46.7
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 7.7e-12 73.6 64 54.7
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 7.7e-12 73.6 65 53.8
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 1.0e-11 73.2 70 55.7
DCAR_022386 Daucus carota HOM05D000433 ORTHO05D000443 1.3e-11 72.8 72 54.2
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 1.3e-11 72.8 73 50.7
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.7e-11 72.4 64 50.0
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 1.7e-11 72.4 63 52.4
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 2.2e-11 72.0 63 52.4
MBI01_g18876_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 2.9e-11 71.6 59 54.2
Atru.chr11.2618 Acer truncatum HOM05D000433 ORTHO05D000443 6.5e-11 70.5 62 51.6
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 6.5e-11 70.5 77 42.9
MD02G1309600 Malus domestica HOM05D000433 ORTHO05D000443 6.5e-11 70.5 76 46.1
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 6.5e-11 70.5 65 49.2
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 6.5e-11 70.5 64 51.6
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 8.5e-11 70.1 75 45.3
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 8.5e-11 70.1 74 45.9
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 8.5e-11 70.1 74 45.9
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 8.5e-11 70.1 68 52.9
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 1.1e-10 69.7 75 45.3
BraA09t41000Z Brassica rapa HOM05D000433 ORTHO05D000443 1.1e-10 69.7 75 45.3
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 1.1e-10 69.7 85 48.2
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 1.4e-10 69.3 62 50.0
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 1.4e-10 69.3 64 54.7
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 1.4e-10 69.3 65 50.8
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 2.5e-10 68.6 77 45.5
SalBow5G1887 Salvia bowleyana HOM05D000433 ORTHO05D000443 2.5e-10 68.6 68 47.1
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 3.2e-10 68.2 68 51.5
CAN.G219.9 Capsicum annuum HOM05D000433 ORTHO05D000443 3.2e-10 68.2 64 50.0
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 3.2e-10 68.2 75 46.7
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 4.2e-10 67.8 77 44.2
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 4.2e-10 67.8 75 46.7
Atru.chr11.2619 Acer truncatum HOM05D000433 ORTHO05D000443 7.2e-10 67.0 62 50.0
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 7.2e-10 67.0 75 44.0
A09p56050 Brassica napus HOM05D000433 ORTHO05D000443 7.2e-10 67.0 72 44.4
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 7.2e-10 67.0 75 44.0
BolC8t51469H Brassica oleracea HOM05D000433 ORTHO05D000443 7.2e-10 67.0 75 44.0
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 7.2e-10 67.0 70 50.0
HanXRQChr16g0524471 Helianthus annuus HOM05D000433 ORTHO05D000443 9.4e-10 66.6 65 53.8
Oeu053257.1 Olea europaea HOM05D000433 ORTHO05D000443 9.4e-10 66.6 63 55.6
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 9.4e-10 66.6 87 42.5
Nitab4.5_0004290g0040 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.2e-09 66.2 77 49.4
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.6e-09 65.9 77 44.2
PSO782G0017 Papaver somniferum HOM05D000433 ORTHO05D000443 2.1e-09 65.5 73 46.6
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 2.7e-09 65.1 72 41.7
HanXRQChr16g0524461 Helianthus annuus HOM05D000433 ORTHO05D000443 4.6e-09 64.3 63 52.4
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 4.6e-09 64.3 58 53.4
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 7.9e-09 63.5 85 42.4
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.0e-08 63.2 60 48.3
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 1.4e-08 62.8 63 47.6
Haze_03197 Corylus avellana HOM05D000433 ORTHO05D000443 1.4e-08 62.8 53 54.7
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 5.1e-08 60.8 79 41.8
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 6.7e-08 60.5 43 62.8
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.7e-06 55.8 35 71.4
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 2.2e-06 55.5 67 43.3
Peaxi162Scf00953g00032 Petunia axillaris HOM05D000433 ORTHO05D000443 8.2e-06 53.5 67 43.3


User provided reference genes

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