Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.5e-107 392.5 257 100.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 8.7e-44 181.4 202 66.8
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.9e-43 180.3 87 95.4
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 1.9e-43 180.3 91 92.3
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 7.4e-43 178.3 87 95.4
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.3e-42 177.6 91 89.0
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.3e-42 177.6 91 89.0
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.1e-42 176.8 91 90.1
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.1e-42 176.8 87 93.1
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.8e-42 176.4 90 93.3
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.8e-42 175.6 91 90.1
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 4.8e-42 175.6 91 91.2
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 4.8e-42 175.6 91 91.2
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 4.8e-42 175.6 221 57.5
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 6.2e-42 175.3 91 89.0
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 8.2e-42 174.9 88 92.0
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 1.1e-41 174.5 190 63.7
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.1e-41 174.5 91 90.1
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.1e-41 174.5 87 94.3
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.4e-41 174.1 91 90.1
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.4e-41 174.1 91 90.1
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.4e-41 174.1 91 87.9
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 90.1
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 90.1
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 90.1
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 89.0
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-41 173.7 211 63.0
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 87.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.8e-41 173.7 91 87.9
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 2.4e-41 173.3 102 83.3
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 2.4e-41 173.3 102 83.3
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 2.4e-41 173.3 91 89.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.4e-41 173.3 91 87.9
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.4e-41 173.3 88 89.8
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 3.1e-41 172.9 91 86.8
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 4.0e-41 172.6 88 92.0
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 4.0e-41 172.6 87 93.1
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 5.3e-41 172.2 102 82.4
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 5.3e-41 172.2 88 89.8
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 5.3e-41 172.2 87 92.0
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.3e-41 172.2 102 82.4
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 9.0e-41 171.4 87 90.8
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.0e-41 171.4 91 87.9
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.0e-41 171.4 91 87.9
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.2e-40 171.0 91 87.9
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 1.2e-40 171.0 88 88.6
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.2e-40 171.0 87 90.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.2e-40 171.0 86 90.7
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.2e-40 171.0 90 87.8
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.2e-40 171.0 90 87.8
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.2e-40 171.0 87 90.8
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.2e-40 171.0 91 86.8
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.5e-40 170.6 91 86.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.5e-40 170.6 102 81.4
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.5e-40 170.6 102 81.4
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.0e-40 170.2 102 81.4
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.0e-40 170.2 102 81.4
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 2.0e-40 170.2 87 90.8
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.0e-40 170.2 102 81.4
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.6e-40 169.9 103 80.6
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.6e-40 169.9 88 89.8
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.6e-40 169.9 88 89.8
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.4e-40 169.5 220 68.6
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 3.4e-40 169.5 90 86.7
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 4.5e-40 169.1 91 85.7
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 4.5e-40 169.1 87 90.8
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 4.5e-40 169.1 87 90.8
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 5.8e-40 168.7 91 86.8
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 7.6e-40 168.3 91 85.7
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 7.6e-40 168.3 91 86.8
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 7.6e-40 168.3 87 89.7
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 7.6e-40 168.3 87 89.7
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 7.6e-40 168.3 91 86.8
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.3e-39 167.5 91 86.8
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.3e-39 167.5 91 85.7
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.3e-39 167.5 91 87.9
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.3e-39 167.5 91 85.7
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.7e-39 167.2 87 89.7
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.7e-39 167.2 87 89.7
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.2e-39 166.8 91 84.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.2e-39 166.8 88 88.6
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.2e-39 166.8 103 78.6
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.9e-39 166.4 87 88.5
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 2.9e-39 166.4 88 87.5
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 4.9e-39 165.6 91 84.6
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 6.5e-39 165.2 87 87.4
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 6.5e-39 165.2 91 84.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 8.4e-39 164.9 84 90.5
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 1.1e-38 164.5 91 83.5
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.1e-38 164.5 101 79.2
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.1e-38 164.5 86 88.4
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.9e-38 163.7 87 86.2
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 2.5e-38 163.3 87 89.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 3.2e-38 162.9 87 87.4
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 4.2e-38 162.5 87 85.1
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 4.2e-38 162.5 87 85.1
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 7.1e-38 161.8 92 84.8
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 9.3e-38 161.4 87 85.1
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 9.3e-38 161.4 83 89.2
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.7e-37 159.8 91 83.5
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 3.5e-37 159.5 91 80.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.3e-36 156.8 90 80.0
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 8.7e-36 154.8 87 81.6
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.1e-35 154.5 87 81.6
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.1e-35 154.5 87 81.6
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.1e-35 154.5 91 73.6
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.1e-35 154.5 95 77.9
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.5e-35 154.1 87 81.6
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.5e-35 154.1 87 81.6
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.5e-35 153.3 90 81.1
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.6e-34 150.6 91 79.1
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 2.1e-34 150.2 90 78.9
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 2.8e-34 149.8 89 77.5
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 2.8e-34 149.8 76 90.8
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 4.8e-34 149.1 73 94.5
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 6.3e-34 148.7 88 77.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 5.9e-32 142.1 91 75.8
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 2.9e-31 139.8 82 80.5
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 3.8e-31 139.4 78 82.1
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 5.0e-31 139.0 91 71.4
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 8.5e-31 138.3 73 87.7
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 3.2e-30 136.3 82 78.0
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 7.9e-29 131.7 75 81.3
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.3e-28 130.2 92 59.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.3e-28 130.2 99 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.7e-27 125.6 91 68.1
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 7.4e-27 125.2 75 82.7
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.1e-25 119.8 97 56.7
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.7e-20 102.1 75 69.3
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.5e-19 100.9 84 54.8
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.4e-17 94.4 106 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.2e-16 91.3 48 89.6
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 5.9e-16 89.0 87 55.2
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 5.0e-15 85.9 56 67.9
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 4.4e-11 72.8 44 72.7
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 5.5e-06 55.8 44 56.8


User provided reference genes

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