Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.6e-112 409.5 209 100.0
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 2.9e-69 265.8 183 70.5
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 3.5e-67 258.8 183 67.8
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 2.3e-66 256.1 201 61.2
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 4.3e-65 251.9 183 67.2
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 9.5e-65 250.8 183 65.6
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 9.5e-65 250.8 183 64.5
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 6.2e-64 248.1 183 65.6
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.4e-63 246.9 183 64.5
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.8e-63 246.5 183 62.8
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.8e-63 246.5 183 62.8
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 3.1e-63 245.7 183 64.5
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 4.0e-63 245.4 183 63.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 5.2e-63 245.0 183 64.5
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 6.8e-63 244.6 183 64.5
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 1.5e-62 243.4 183 63.4
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 2.0e-62 243.0 183 64.5
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 3.4e-62 242.3 223 58.7
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 4.4e-62 241.9 183 63.4
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 5.8e-62 241.5 200 59.0
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 7.5e-62 241.1 183 61.2
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 9.8e-62 240.7 207 61.8
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 1.3e-61 240.4 183 64.5
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.7e-61 240.0 183 63.4
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 2.2e-61 239.6 183 60.7
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 2.2e-61 239.6 183 63.4
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.9e-61 239.2 183 63.4
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 3.7e-61 238.8 183 61.2
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 4.9e-61 238.4 183 60.7
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 8.3e-61 237.7 185 62.7
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 1.1e-60 237.3 183 60.7
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.1e-60 237.3 185 62.7
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 4.1e-60 235.3 182 62.1
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.2e-59 233.8 183 60.7
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.2e-59 233.8 183 60.7
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 2.7e-59 232.6 183 63.4
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.7e-59 232.6 183 64.5
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 4.6e-59 231.9 201 56.2
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 4.6e-59 231.9 183 64.5
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 1.7e-58 229.9 183 59.6
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 3.0e-58 229.2 183 60.1
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 3.9e-58 228.8 183 60.7
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 5.1e-58 228.4 183 59.6
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 5.1e-58 228.4 183 59.0
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 6.6e-58 228.0 202 56.9
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 1.1e-57 227.3 183 60.7
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.5e-57 226.1 185 60.0
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 7.3e-57 224.6 183 60.1
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 7.3e-57 224.6 185 58.4
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 7.3e-57 224.6 203 54.7
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 7.3e-57 224.6 183 59.6
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 2.1e-56 223.0 183 59.0
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 2.8e-56 222.6 170 63.5
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 4.7e-56 221.9 183 58.5
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 6.2e-56 221.5 189 57.1
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 8.1e-56 221.1 182 57.7
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 1.1e-55 220.7 184 58.7
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.4e-55 220.3 213 54.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 2.3e-55 219.5 183 59.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 3.1e-55 219.2 183 59.6
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 6.8e-55 218.0 182 58.8
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 6.8e-55 218.0 182 56.0
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 6.8e-55 218.0 183 58.5
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 6.8e-55 218.0 227 50.7
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 6.8e-55 218.0 183 56.3
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.2e-54 217.2 222 51.4
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.0e-54 216.5 182 57.1
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 2.0e-54 216.5 209 53.1
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 2.0e-54 216.5 209 53.1
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 2.6e-54 216.1 183 56.8
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 3.4e-54 215.7 184 58.7
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 5.8e-54 214.9 182 56.0
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 5.8e-54 214.9 183 57.9
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 7.5e-54 214.5 184 57.6
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 9.9e-54 214.2 182 57.1
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 1.3e-53 213.8 208 52.4
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.2e-53 213.0 205 51.7
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 8.3e-53 211.1 183 55.7
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 1.1e-52 210.7 183 56.3
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.1e-52 210.7 182 56.6
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.1e-52 210.7 153 66.0
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.4e-52 210.3 183 55.7
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.9e-52 209.9 183 56.8
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 9.2e-52 207.6 197 53.8
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.6e-51 206.8 146 64.4
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 8.6e-50 201.1 183 56.3
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 9.5e-49 197.6 210 47.6
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.2e-48 197.2 210 47.1
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 4.0e-47 192.2 169 58.0
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 4.4e-46 188.7 155 60.6
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 5.8e-46 188.3 166 55.4
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 5.8e-46 188.3 183 54.1
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.7e-45 186.8 171 52.6
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.7e-45 186.8 171 52.6
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 2.4e-44 183.0 163 54.0
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 2.4e-44 183.0 136 62.5
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.2e-43 180.6 175 51.4
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.7e-42 176.8 183 53.0
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.5e-41 173.7 140 58.6
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 5.6e-41 171.8 119 70.6
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 6.9e-39 164.9 161 54.7
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 3.4e-38 162.5 121 66.1
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.4e-38 162.2 171 51.5
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.1e-36 157.5 137 53.3
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.9e-36 156.8 171 50.3
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 4.2e-36 155.6 206 43.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.3e-34 150.6 171 49.1
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 9.6e-33 144.4 117 61.5
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 2.1e-32 143.3 195 43.1
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 4.2e-28 129.0 192 35.4
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 7.1e-28 128.3 111 55.0
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.0e-26 124.4 183 41.5
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 8.7e-26 121.3 107 51.4
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 4.3e-25 119.0 93 54.8
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.4e-23 113.2 181 36.5
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.6e-22 109.8 93 51.6
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 3.0e-18 96.3 78 60.3
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 9.6e-17 91.3 105 40.0
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 5.3e-15 85.5 78 48.7
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-10 70.9 61 49.2
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 1.5e-06 57.4 43 60.5


User provided reference genes

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