Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.4e-125 452.2 326 100.0
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 5.4e-75 285.4 324 75.9
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.8e-71 273.1 325 76.9
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.0e-65 254.6 326 72.4
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 8.1e-63 245.0 328 71.6
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.2e-61 241.1 326 71.5
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 5.8e-61 238.8 326 71.5
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 9.9e-61 238.0 327 72.2
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-60 237.7 330 70.9
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.7e-60 237.3 329 70.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.7e-60 237.3 327 71.9
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.1e-58 230.3 326 71.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 6.0e-58 228.8 328 69.8
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 6.0e-58 228.8 325 70.2
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.7e-57 225.3 350 60.0
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 8.7e-57 224.9 334 69.8
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.5e-56 224.2 327 57.5
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.5e-56 224.2 328 71.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 2.5e-56 223.4 328 70.7
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 3.3e-56 223.0 328 69.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.3e-56 223.0 326 71.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 4.3e-56 222.6 325 71.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 4.3e-56 222.6 324 68.5
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 4.3e-56 222.6 331 70.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.3e-55 221.1 326 70.2
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.8e-55 219.2 329 69.0
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 8.2e-55 218.4 332 70.5
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.1e-54 218.0 328 59.8
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.8e-54 217.2 326 70.2
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.4e-54 216.9 331 68.9
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.4e-54 216.9 331 68.9
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 5.3e-54 215.7 329 69.6
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 6.9e-54 215.3 329 69.3
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 9.0e-54 214.9 324 67.9
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-53 214.5 325 68.0
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.5e-53 214.2 329 70.2
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.0e-53 213.8 327 69.1
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 4.5e-53 212.6 328 68.0
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 5.8e-53 212.2 354 52.5
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 7.6e-53 211.8 330 68.8
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.8e-52 209.5 331 69.2
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.1e-51 208.0 334 69.2
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.1e-51 208.0 323 65.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.4e-51 207.6 318 59.1
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.9e-51 207.2 329 70.2
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.2e-51 206.1 313 68.1
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 5.5e-51 205.7 336 64.9
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 7.1e-51 205.3 328 58.2
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 9.3e-51 204.9 325 66.8
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.2e-50 204.5 328 68.6
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.5e-50 203.0 328 68.3
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.0e-50 202.2 330 66.4
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 7.9e-50 201.8 329 50.5
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.0e-49 201.4 329 66.6
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.0e-49 201.4 328 68.3
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.3e-49 200.3 319 65.5
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.0e-49 199.9 329 66.9
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 3.9e-49 199.5 318 63.5
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 5.1e-49 199.1 328 50.3
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 8.7e-49 198.4 320 68.8
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.5e-48 197.6 300 68.7
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.5e-48 196.8 325 65.8
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 4.3e-48 196.1 327 66.4
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.7e-47 193.0 329 65.7
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 3.7e-47 193.0 337 64.1
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 8.2e-47 191.8 290 68.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-46 191.0 338 66.9
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-46 190.7 329 65.0
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.8e-46 190.7 317 65.3
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 6.9e-46 188.7 326 66.3
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 6.9e-46 188.7 299 65.2
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 6.9e-46 188.7 340 60.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.5e-45 187.6 327 64.8
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.5e-45 187.6 321 63.9
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 3.4e-45 186.4 325 65.2
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.7e-44 184.1 330 63.6
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.2e-44 183.7 100 89.0
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 2.9e-44 183.3 326 66.3
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.8e-44 183.0 319 65.8
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 5.0e-44 182.6 343 63.8
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 6.5e-44 182.2 323 63.8
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.1e-42 177.2 311 64.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.7e-42 176.8 249 72.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.3e-41 173.7 326 62.9
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 6.7e-41 172.2 251 72.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.5e-40 170.2 322 60.6
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.3e-40 169.9 332 64.5
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 5.7e-40 169.1 321 60.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 5.7e-40 169.1 321 60.4
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 9.7e-40 168.3 321 60.4
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-39 167.9 321 60.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.3e-39 167.9 323 63.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.7e-39 166.4 217 79.7
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.7e-39 166.4 340 60.9
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.8e-38 164.1 183 58.5
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.8e-38 164.1 282 66.3
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.8e-38 164.1 328 39.0
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.4e-38 163.7 340 60.0
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 6.9e-38 162.2 339 60.2
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.2e-37 161.4 322 60.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.7e-36 157.5 341 59.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 2.2e-36 157.1 341 60.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.0e-36 156.0 318 59.7
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 6.5e-36 155.6 313 60.7
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 4.2e-35 152.9 356 48.3
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.6e-34 151.0 342 58.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.6e-34 151.0 335 51.0
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 7.9e-34 148.7 342 58.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.0e-33 148.3 323 58.8
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.0e-33 148.3 443 33.4
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 3.0e-33 146.7 167 55.1
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.8e-33 145.2 348 54.3
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.1e-32 144.8 219 72.6
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.5e-32 144.4 334 49.7
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.2e-29 134.8 176 50.0
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-29 133.7 304 59.9
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.4e-29 133.3 321 53.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.7e-26 123.6 164 50.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.3e-25 120.6 276 57.6
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 9.7e-24 115.2 282 59.2
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.8e-23 113.6 326 54.3
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.0e-21 107.5 84 85.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 7.2e-19 99.0 327 54.1
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 3.6e-18 96.7 252 59.9
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.0e-17 95.1 84 79.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 8.8e-17 92.0 84 79.8
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 7.5e-16 89.0 215 65.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.3e-15 88.2 147 42.2
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 4.8e-15 86.3 84 72.6
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 5.3e-14 82.8 207 56.0
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 2.7e-13 80.5 87 69.0
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.9e-13 79.3 246 58.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 5.0e-12 76.3 56 64.3
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 5.0e-12 76.3 57 64.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 2.5e-11 73.9 56 62.5
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 8.0e-10 68.9 361 47.6
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 5.7e-08 62.8 52 88.5


User provided reference genes

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