Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.1e-86 320.9 171 100.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-54 214.5 164 70.1
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.3e-47 191.0 164 61.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.2e-46 190.3 164 61.0
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.1e-46 189.5 164 60.4
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 4.0e-45 185.3 164 59.1
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.4e-44 182.2 164 59.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.4e-44 181.8 164 60.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 7.6e-44 181.0 164 59.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.9e-44 180.6 164 59.1
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.9e-44 180.6 164 59.1
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.9e-44 180.6 164 59.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-43 180.3 164 57.3
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.3e-43 180.3 163 59.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.3e-43 180.3 164 59.1
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.3e-43 180.3 164 59.1
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.2e-43 179.5 164 58.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.9e-43 178.3 164 57.3
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.4e-43 177.9 164 57.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 8.4e-43 177.6 164 58.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.4e-42 176.8 163 58.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.4e-42 176.0 164 57.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.2e-42 175.6 164 57.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.2e-42 175.6 163 57.7
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 4.2e-42 175.3 163 55.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.2e-42 175.3 164 57.3
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.2e-42 175.3 164 54.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.2e-42 175.3 164 55.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.2e-42 175.3 161 57.8
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 5.4e-42 174.9 164 58.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.4e-42 174.9 164 54.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.1e-42 174.5 163 57.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 7.1e-42 174.5 164 56.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 9.3e-42 174.1 164 56.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.2e-41 173.7 164 57.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.2e-41 173.7 164 56.7
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.2e-41 173.7 164 56.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.6e-41 173.3 164 56.1
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.6e-41 173.3 164 54.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.6e-41 173.3 163 57.7
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.6e-41 173.3 164 54.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.1e-41 172.9 164 54.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.1e-41 172.9 164 56.7
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.7e-41 172.6 164 58.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.7e-41 172.6 163 58.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.7e-41 172.6 163 58.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.7e-41 172.6 164 54.3
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.5e-41 172.2 164 56.7
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.6e-41 171.8 164 57.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.6e-41 171.8 164 56.1
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.6e-41 171.8 164 55.5
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 6.0e-41 171.4 164 56.7
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 6.0e-41 171.4 164 56.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 6.0e-41 171.4 161 55.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 6.0e-41 171.4 163 55.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 6.0e-41 171.4 164 54.3
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 6.0e-41 171.4 164 56.1
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 7.8e-41 171.0 164 55.5
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.8e-41 171.0 164 56.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.0e-40 170.6 163 56.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.0e-40 170.6 164 55.5
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-40 170.2 164 56.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-40 170.2 164 56.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.3e-40 170.2 163 57.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.3e-40 170.2 164 56.1
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-40 169.5 164 55.5
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-40 169.5 164 56.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-40 169.5 164 56.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.3e-40 169.5 164 56.1
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.0e-40 169.1 164 54.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.0e-40 169.1 164 56.1
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.0e-40 169.1 161 55.3
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 5.1e-40 168.3 164 55.5
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 5.1e-40 168.3 169 55.6
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 5.1e-40 168.3 169 53.3
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.6e-40 167.9 164 54.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.1e-39 167.2 164 53.7
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.5e-39 166.8 163 55.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.5e-39 166.8 164 54.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.5e-39 166.0 164 54.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.3e-39 165.2 164 53.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.6e-39 164.9 164 53.7
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.6e-39 164.9 164 52.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 7.3e-39 164.5 163 52.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.6e-39 164.1 164 56.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-38 163.7 164 53.7
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.3e-38 163.7 165 53.9
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.3e-38 163.7 164 54.3
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.3e-38 163.7 163 55.2
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.6e-38 163.3 164 53.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.1e-38 162.9 164 52.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.1e-38 162.9 164 52.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.1e-38 162.9 164 52.4
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.8e-38 162.5 164 54.9
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.8e-38 162.5 164 54.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.8e-38 162.5 164 51.2
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.6e-38 162.2 164 52.4
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 4.8e-38 161.8 164 53.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.2e-38 161.4 164 51.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-37 160.6 164 52.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.1e-37 160.6 164 52.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.8e-37 159.8 164 53.7
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.1e-37 159.1 168 52.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.1e-37 159.1 168 52.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 7.6e-36 154.5 164 53.7
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.9e-36 154.1 169 51.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.2e-35 152.9 170 50.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.8e-35 152.1 172 50.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.4e-34 150.2 170 50.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.4e-34 149.4 173 50.3
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.8e-33 144.4 147 53.7
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.0e-32 142.5 138 56.5
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 3.3e-31 139.0 123 57.7
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 7.3e-31 137.9 164 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.3e-30 137.1 163 44.2
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 4.8e-30 135.2 164 47.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 8.1e-30 134.4 163 44.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.9e-27 125.9 164 47.0
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.7e-25 119.4 163 46.0
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.6e-25 118.6 165 43.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.7e-24 114.4 135 48.9
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.9e-23 113.2 169 40.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 3.3e-23 112.5 184 41.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 7.4e-23 111.3 167 39.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-21 106.7 88 70.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-21 106.7 142 44.4
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.0e-21 104.4 164 40.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 9.0e-21 104.4 155 39.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-20 103.6 162 40.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.4e-20 102.4 158 39.9
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.9e-18 96.7 74 70.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 5.7e-15 85.1 135 40.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 5.3e-13 78.6 93 45.2
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-08 63.9 116 36.2


User provided reference genes

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