Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 5.4e-47 190.7 97 100.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 9.6e-36 153.3 93 81.7
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.3e-35 152.9 93 82.8
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.1e-35 152.1 93 80.6
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 4.8e-35 151.0 93 80.6
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.2e-35 150.6 93 80.6
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 6.2e-35 150.6 93 80.6
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 8.1e-35 150.2 92 81.5
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.1e-35 150.2 95 78.9
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.1e-34 149.8 93 81.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.4e-34 149.4 93 79.6
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.4e-34 149.4 93 79.6
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.4e-34 149.4 93 79.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.4e-34 148.7 93 79.6
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.4e-34 148.7 93 79.6
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.4e-34 148.7 93 77.4
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 3.1e-34 148.3 93 78.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 5.3e-34 147.5 93 79.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 6.9e-34 147.1 93 79.6
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 6.9e-34 147.1 94 77.7
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.0e-34 146.7 93 79.6
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.0e-34 146.7 93 79.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 9.0e-34 146.7 91 81.3
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 9.0e-34 146.7 93 78.5
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 9.0e-34 146.7 93 79.6
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.2e-33 146.4 93 77.4
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.5e-33 146.0 94 76.6
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.0e-33 145.6 111 72.1
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.4e-33 144.8 93 77.4
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 5.8e-33 144.1 93 76.3
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 5.8e-33 144.1 93 75.3
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.6e-33 143.7 93 76.3
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 9.9e-33 143.3 93 78.5
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 9.9e-33 143.3 95 74.7
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 2.2e-32 142.1 93 75.3
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 3.8e-32 141.4 93 75.3
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.8e-32 141.4 93 76.3
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 4.9e-32 141.0 95 72.6
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 4.9e-32 141.0 93 75.3
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 6.4e-32 140.6 93 74.2
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 6.4e-32 140.6 92 73.9
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.1e-31 139.8 95 71.6
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-31 139.8 93 73.1
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.4e-31 139.4 94 77.7
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.4e-31 139.4 93 74.2
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.4e-31 139.4 93 73.1
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 2.4e-31 138.7 93 78.5
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 2.4e-31 138.7 91 71.4
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.4e-31 138.7 95 72.6
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.4e-31 138.7 92 72.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.2e-31 138.3 92 75.0
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 4.2e-31 137.9 95 71.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 4.2e-31 137.9 86 79.1
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 4.2e-31 137.9 96 70.8
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 5.4e-31 137.5 93 73.1
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 5.4e-31 137.5 93 75.3
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.3e-31 136.7 94 71.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 9.3e-31 136.7 93 73.1
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 9.3e-31 136.7 89 71.9
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.2e-30 136.3 93 73.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.6e-30 136.0 91 73.6
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 2.1e-30 135.6 93 72.0
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 2.1e-30 135.6 93 71.0
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.1e-30 135.6 93 72.0
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.1e-30 135.6 93 72.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 2.1e-30 135.6 93 68.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 2.7e-30 135.2 93 72.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.7e-30 135.2 94 73.4
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 3.5e-30 134.8 93 71.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.5e-30 134.8 95 70.5
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 3.5e-30 134.8 100 71.0
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 4.6e-30 134.4 93 72.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.6e-30 134.4 93 72.0
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 7.9e-30 133.7 96 68.8
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.0e-29 133.3 93 67.7
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.0e-29 133.3 100 69.0
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.0e-29 133.3 94 72.3
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-29 132.5 91 69.2
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.8e-29 132.5 73 84.9
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.3e-29 132.1 91 70.3
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.0e-29 131.7 91 69.2
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.9e-29 131.3 93 67.7
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.1e-29 131.0 97 72.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.1e-29 131.0 85 76.5
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.1e-29 131.0 93 69.9
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 5.1e-29 131.0 95 67.4
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.7e-29 130.6 95 73.7
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 8.7e-29 130.2 94 71.3
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.1e-28 129.8 93 68.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.1e-28 129.8 95 68.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.1e-28 129.8 92 70.7
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 2.5e-28 128.6 91 71.4
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.3e-28 128.3 94 70.2
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.3e-28 127.9 93 67.7
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.3e-28 127.9 93 72.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 4.3e-28 127.9 106 65.1
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.3e-27 126.3 70 82.9
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 4.8e-27 124.4 91 65.9
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 6.2e-27 124.0 91 65.9
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 8.1e-27 123.6 94 68.1
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 8.1e-27 123.6 86 69.8
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.1e-26 123.2 93 64.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.1e-26 123.2 91 68.1
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.4e-26 122.9 131 55.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 9.0e-26 120.2 90 63.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 9.0e-26 120.2 95 67.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.2e-25 119.8 93 61.3
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.2e-25 119.8 90 62.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.2e-25 119.8 104 61.5
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.6e-25 118.6 92 62.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 4.5e-25 117.9 93 69.9
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 4.5e-25 117.9 63 85.7
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 5.8e-25 117.5 91 60.4
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 5.8e-25 117.5 78 67.9
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 5.8e-25 117.5 82 65.9
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.3e-24 116.3 93 62.4
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.3e-24 116.3 90 61.1
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.2e-24 115.5 86 62.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.2e-24 115.5 86 62.8
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.2e-24 115.5 86 62.8
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 4.9e-24 114.4 90 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.4e-24 113.6 82 62.2
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.1e-23 113.2 80 65.0
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.9e-23 112.5 90 57.8
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.9e-23 112.5 83 62.7
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.2e-23 111.7 70 72.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 3.2e-23 111.7 65 75.4
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 7.1e-23 110.5 81 63.0
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 9.3e-23 110.2 90 57.8
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.2e-22 109.8 78 65.4
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.2e-22 109.8 78 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.1e-22 109.0 96 53.1
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.7e-22 108.6 93 54.8
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.7e-22 108.6 58 86.2
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 2.3e-21 105.5 68 72.1
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.5e-20 102.8 58 79.3
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 2.5e-20 102.1 57 80.7
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.3e-19 99.8 128 45.3
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 4.8e-19 97.8 93 60.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.2e-19 97.1 55 78.2
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.4e-18 95.5 68 69.1
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.4e-18 95.5 68 69.1
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 2.1e-14 82.4 64 54.7
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 6.0e-14 80.9 47 78.7
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.8e-13 79.3 70 48.6
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 2.3e-13 79.0 45 82.2
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.9e-13 78.2 45 80.0
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 9.7e-12 73.6 49 67.3
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.6e-11 72.8 46 78.3
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.8e-11 71.2 64 54.7
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.1e-10 68.6 50 62.0
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 4.1e-10 68.2 52 67.3
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 4.5e-09 64.7 46 65.2
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.7e-08 62.8 41 65.9
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 6.5e-08 60.8 78 39.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 8.5e-08 60.5 62 45.2
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.1e-07 60.1 37 70.3


User provided reference genes

Program Settings