Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.3e-157 559.7 279 100.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.7e-130 469.5 280 82.9
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.7e-130 469.5 275 83.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.3e-130 469.2 281 81.1
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 8.6e-130 467.2 274 83.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-129 466.5 280 82.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.3e-129 464.9 277 81.6
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.3e-129 464.9 277 81.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 4.7e-128 461.5 273 82.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.2e-128 461.1 275 82.2
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 6.2e-128 461.1 273 82.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.1e-128 460.7 280 81.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 8.1e-128 460.7 285 79.6
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.1e-127 460.3 275 82.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.1e-127 460.3 273 83.5
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.1e-127 460.3 285 79.6
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.4e-127 459.9 275 82.2
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.8e-127 459.5 284 79.6
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.0e-127 458.4 275 82.2
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 5.2e-127 458.0 273 82.4
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 6.8e-127 457.6 274 82.8
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.8e-127 457.6 276 82.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 8.9e-127 457.2 287 78.4
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-126 456.8 275 82.2
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.5e-126 456.4 277 80.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.0e-126 456.1 287 77.7
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.6e-126 455.7 274 82.5
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 3.4e-126 455.3 291 78.7
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 7.6e-126 454.1 276 81.9
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 9.9e-126 453.8 273 81.0
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.2e-125 452.6 272 80.5
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 6.4e-125 451.1 291 77.3
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 6.4e-125 451.1 278 79.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.1e-124 450.3 273 81.0
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.1e-124 450.3 273 81.7
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-124 450.3 278 79.5
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.9e-124 449.5 290 77.2
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.4e-124 449.1 274 79.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 5.4e-124 448.0 274 79.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 7.1e-124 447.6 289 76.1
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 9.2e-124 447.2 267 81.6
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.2e-123 446.8 274 79.9
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-123 446.8 277 79.1
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.7e-123 445.7 274 79.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 3.5e-123 445.3 289 76.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.7e-122 443.0 273 79.5
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.7e-122 443.0 272 79.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 2.3e-122 442.6 272 79.4
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.3e-122 442.6 276 78.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 3.0e-122 442.2 281 77.2
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.1e-122 441.4 275 78.5
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.1e-122 441.4 317 72.2
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.1e-121 440.3 277 77.6
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.5e-121 439.1 273 79.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.5e-121 439.1 273 79.1
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 2.5e-121 439.1 273 78.8
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 3.3e-121 438.7 277 78.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 3.3e-121 438.7 271 79.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 4.3e-121 438.3 277 78.7
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 5.6e-121 438.0 273 76.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 9.6e-121 437.2 277 78.0
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-120 436.8 275 78.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.1e-120 436.0 326 68.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.8e-120 435.6 274 77.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.8e-120 435.6 322 70.5
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.6e-120 435.3 282 77.0
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 4.7e-120 434.9 273 77.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.4e-119 433.3 275 78.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.8e-119 433.0 273 76.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.8e-119 433.0 287 76.7
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.6e-118 429.1 282 75.2
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.4e-118 428.7 294 74.5
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 5.8e-118 427.9 273 75.1
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 7.6e-118 427.6 278 76.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 7.6e-118 427.6 296 73.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 7.6e-118 427.6 279 77.4
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 4.9e-117 424.9 299 72.9
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.7e-115 419.1 278 76.6
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.5e-115 418.7 276 76.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 4.6e-115 418.3 248 81.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.3e-114 416.8 290 71.0
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.3e-114 416.8 280 76.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.7e-114 416.4 281 73.0
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.3e-114 416.0 275 72.7
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.3e-114 416.0 273 74.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 8.7e-114 414.1 271 74.5
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.3e-113 412.1 268 73.9
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 4.3e-113 411.8 284 73.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.3e-113 411.8 306 68.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 5.6e-113 411.4 285 74.0
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 5.6e-113 411.4 282 73.4
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 7.3e-113 411.0 291 69.8
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 7.3e-113 411.0 291 69.8
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.8e-112 409.1 298 69.1
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.8e-112 409.1 274 73.0
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 8.1e-112 407.5 323 66.3
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.1e-111 405.6 273 72.9
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.1e-111 405.6 273 71.8
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 5.3e-111 404.8 313 67.7
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 5.3e-111 404.8 310 67.4
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 9.0e-111 404.1 274 72.6
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.6e-110 402.5 309 66.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.2e-109 399.4 280 70.7
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.9e-108 396.4 273 72.5
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.9e-108 396.4 273 72.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.5e-105 386.0 280 72.1
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.8e-104 381.7 233 81.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.9e-101 371.7 222 81.5
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.2e-100 368.6 264 69.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.9e-98 362.1 224 78.6
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.6e-96 356.7 273 68.1
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 2.2e-93 346.3 276 64.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.5e-92 341.7 243 71.2
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 9.3e-92 340.9 291 61.9
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.1e-91 339.7 275 64.0
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.9e-91 337.8 208 79.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 6.3e-88 328.2 240 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.1e-87 325.9 288 59.7
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.3e-87 325.1 284 58.1
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.9e-86 321.6 286 58.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.9e-83 311.2 264 62.5
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.0e-82 310.8 304 56.6
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 7.4e-81 304.7 193 79.8
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-79 300.4 225 68.0
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.4e-79 299.7 202 71.3
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 5.9e-78 295.0 258 60.9
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.0e-77 294.3 190 76.3
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.2e-77 293.1 181 80.1
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 4.1e-71 272.3 269 54.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.4e-70 269.2 181 72.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-62 244.2 190 65.3
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.7e-61 240.4 146 80.1
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.7e-61 240.4 246 56.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 8.6e-45 184.9 111 81.1
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.8e-42 175.3 116 75.0
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.5e-41 174.1 98 84.7
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.7e-40 170.6 96 83.3
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.0e-37 159.1 273 37.4
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 7.3e-36 155.2 136 62.5
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.6e-35 152.9 106 69.8
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.6e-35 152.9 108 71.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 8.0e-35 151.8 277 33.2
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 5.2e-34 149.1 94 75.5
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.6e-30 137.5 95 72.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 7.8e-30 135.2 219 38.8
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 7.3e-28 128.6 266 33.1
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-27 127.9 83 73.5
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 2.8e-27 126.7 79 77.2
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 8.9e-26 121.7 66 84.8
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.4e-25 119.4 258 31.8
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.9e-24 116.7 105 60.0
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.9e-24 116.7 109 58.7
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.9e-24 116.7 105 60.0
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.7e-24 116.3 177 40.1
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 6.4e-24 115.5 105 60.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.9e-23 114.0 109 56.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 3.2e-23 113.2 109 56.9
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.5e-22 109.8 109 56.0
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.9e-21 106.3 105 56.2
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 2.1e-19 100.5 161 37.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-18 97.8 87 57.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 8.9e-18 95.1 155 37.4
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.9e-18 95.1 52 90.4
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.9e-16 90.1 83 57.8
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 3.5e-14 83.2 46 84.8
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 4.7e-11 72.8 45 68.9
Hund22321 Selenicereus undatus HOM05D001165 ORTHO05D010360 3.5e-06 56.6 122 28.7


User provided reference genes

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