Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.9e-202 708.0 371 100.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.8e-144 515.8 357 77.0
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.4e-143 512.7 359 75.5
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 7.9e-139 497.7 356 76.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.3e-136 490.3 352 73.6
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.7e-136 490.0 348 75.6
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 2.2e-136 489.6 359 73.3
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 6.3e-136 488.0 348 75.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 6.3e-136 488.0 349 75.1
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 6.9e-135 484.6 356 73.3
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.6e-134 482.6 357 73.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.9e-133 479.2 350 74.6
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 5.0e-133 478.4 348 74.7
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.5e-133 478.0 350 74.6
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 8.5e-133 477.6 359 70.8
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.9e-132 476.5 344 74.4
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.5e-132 476.1 350 74.3
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.2e-132 475.7 359 71.9
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 9.4e-132 474.2 357 72.3
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.2e-131 473.8 351 74.1
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.6e-131 472.2 356 71.6
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 4.7e-131 471.9 351 73.8
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 7.9e-131 471.1 348 72.7
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.0e-130 470.7 351 72.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.4e-130 470.3 353 71.1
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.4e-130 470.3 351 71.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.9e-130 468.8 351 72.9
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 5.1e-130 468.4 349 73.1
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 5.1e-130 468.4 350 74.3
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 8.8e-130 467.6 337 73.9
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.5e-129 466.8 351 72.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.5e-129 466.8 352 71.3
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.6e-129 466.1 356 70.2
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 3.3e-129 465.7 349 72.8
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 3.3e-129 465.7 353 71.1
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 9.7e-129 464.2 349 71.3
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.3e-128 463.8 352 69.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.7e-128 463.4 355 70.7
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.8e-128 462.6 349 70.2
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.7e-128 462.2 352 71.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.8e-128 461.8 355 69.9
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.4e-127 459.5 351 70.9
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 3.1e-127 459.1 349 70.2
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 9.1e-127 457.6 352 70.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.5e-126 455.7 355 68.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 4.5e-126 455.3 355 68.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 7.7e-126 454.5 350 71.7
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.0e-125 454.1 352 69.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.3e-125 453.8 351 70.1
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.0e-125 451.8 352 67.0
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.5e-125 451.1 352 67.6
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.5e-124 450.3 353 70.8
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.2e-124 449.1 350 68.9
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 7.2e-124 448.0 337 71.2
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 9.4e-124 447.6 348 67.8
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-123 446.8 349 70.8
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.6e-123 446.8 350 70.0
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.6e-123 446.8 352 69.0
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 2.1e-123 446.4 358 69.0
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 3.6e-123 445.7 350 70.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 6.1e-123 444.9 363 68.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.0e-122 444.1 353 69.1
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.8e-122 443.4 321 72.3
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-122 443.0 359 68.0
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 6.7e-122 441.4 348 69.5
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 8.8e-122 441.0 348 69.5
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 8.8e-122 441.0 352 69.0
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.0e-121 439.9 354 66.9
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 5.7e-121 438.3 349 68.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 4.8e-120 435.3 352 69.0
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 8.2e-120 434.5 362 67.7
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.1e-119 434.1 355 66.5
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.4e-119 433.7 346 67.6
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.4e-119 433.0 359 63.8
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.1e-119 432.6 362 67.4
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 7.0e-119 431.4 352 67.0
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 9.1e-119 431.0 362 67.1
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 2.2e-117 426.4 354 66.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.1e-116 424.1 310 73.2
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.9e-116 423.3 359 66.6
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.2e-115 420.6 356 66.9
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-115 420.6 356 66.6
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 4.7e-115 418.7 352 64.5
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 4.7e-115 418.7 352 64.5
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.8e-111 406.8 411 58.4
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 4.1e-111 405.6 342 64.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 5.4e-111 405.2 339 64.6
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 2.7e-110 402.9 358 62.3
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.5e-110 402.5 360 64.4
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 7.7e-110 401.4 339 64.0
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 3.0e-106 389.4 342 62.9
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 4.0e-106 389.0 380 57.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 8.8e-106 387.9 350 63.4
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.3e-104 384.0 349 61.0
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 3.7e-104 382.5 349 62.5
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.8e-103 380.2 358 60.1
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 3.1e-103 379.4 312 65.4
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 9.2e-103 377.9 358 58.9
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.2e-102 377.5 362 58.3
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.5e-102 375.9 347 59.9
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 6.6e-101 371.7 361 57.9
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.5e-100 370.5 363 57.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 4.3e-100 369.0 361 57.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 4.3e-100 369.0 361 57.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 7.3e-100 368.2 363 56.7
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.2e-99 367.5 248 77.0
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-98 363.6 361 56.8
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.3e-98 363.2 351 57.5
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 4.0e-98 362.5 358 57.0
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 4.9e-96 355.5 358 56.7
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 3.5e-94 349.4 355 55.5
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-93 347.8 267 68.9
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 7.3e-92 341.7 280 64.3
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.6e-91 340.5 351 55.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 3.2e-79 299.7 365 51.8
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.7e-78 296.6 213 72.3
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-76 290.8 213 71.4
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.6e-76 288.9 213 71.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.6e-76 288.9 213 71.4
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.0e-73 280.4 356 54.5
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 9.9e-73 278.1 188 79.8
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.8e-64 249.6 272 52.2
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 1.6e-62 244.2 353 44.2
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.1e-62 243.8 290 51.0
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.9e-60 237.3 351 45.9
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 3.1e-50 203.4 249 49.0
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.1e-43 180.6 163 61.3
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.6e-38 164.5 103 79.6
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 7.4e-36 155.6 358 37.4
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.1e-35 154.1 138 64.5
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.1e-30 137.5 142 59.9
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.4e-26 124.8 259 37.5
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.8e-24 116.7 310 34.2
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 4.2e-23 113.2 340 32.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 7.2e-23 112.5 264 31.8
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.9e-21 106.7 109 53.2
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-20 104.8 105 57.1
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 6.9e-18 95.9 104 53.8
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 2.0e-17 94.4 61 78.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 5.0e-16 89.7 53 79.2
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.0e-13 82.0 90 47.8
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 3.3e-12 77.0 41 87.8
SEGI_21680 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.2e-06 58.5 48 64.6
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 2.1e-06 57.8 43 67.4


User provided reference genes

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