Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 0.0e+00 1104.0 557 100.0
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 7.6e-312 1072.8 557 97.7
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 2.4e-304 1048.1 566 94.9
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 5.1e-299 1030.4 566 93.5
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 7.9e-268 926.8 503 94.4
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 1.1e-256 889.8 551 85.3
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 3.5e-255 884.8 566 82.2
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 1.8e-251 872.5 545 85.1
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 7.7e-247 857.1 531 84.7
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 1.2e-242 843.2 566 79.7
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 5.9e-239 830.9 431 97.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 4.9e-233 811.2 535 80.9
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 4.3e-229 798.1 534 79.4
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 2.8e-228 795.4 534 79.2
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 2.8e-228 795.4 539 79.4
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 3.7e-225 785.0 526 79.3
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 9.2e-224 780.4 503 81.7
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 1.6e-220 769.6 438 90.6
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.2e-218 763.5 534 77.3
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 3.5e-215 751.9 484 81.8
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 3.1e-211 738.8 532 75.2
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 3.3e-205 718.8 502 77.9
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 3.3e-205 718.8 502 77.9
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.3e-205 718.8 473 81.2
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.3e-205 718.8 473 81.2
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 4.7e-204 714.9 491 78.6
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 4.7e-204 714.9 491 78.6
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-197 693.0 470 79.8
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 4.3e-197 691.8 629 63.8
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.0e-195 685.3 471 78.8
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 6.9e-195 684.5 527 73.2
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.9e-195 684.5 473 78.6
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 1.1e-192 677.2 354 97.2
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 1.9e-192 676.4 394 87.3
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 4.6e-191 671.8 356 95.2
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 1.9e-184 649.8 522 71.3
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 7.4e-181 637.9 563 64.8
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 2.3e-174 616.3 495 70.9
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.8e-172 609.4 445 74.4
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 7.9e-167 591.3 432 74.5
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 1.1e-165 587.4 350 85.4
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 5.3e-163 578.6 491 68.0
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 1.7e-161 573.5 376 80.1
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 8.5e-161 571.2 520 64.6
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 1.6e-159 567.0 481 65.3
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 4.1e-155 552.4 550 60.4
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 5.0e-153 545.4 404 75.5
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 4.7e-151 538.9 550 58.7
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-150 537.0 503 62.0
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-150 537.0 503 62.0
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-150 537.0 503 62.0
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-150 537.0 503 62.0
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-150 537.0 503 62.0
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.9e-144 516.9 365 74.2
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 8.8e-142 508.1 526 58.7
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 3.4e-133 479.6 445 61.8
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 3.4e-133 479.6 322 80.4
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 5.0e-129 465.7 314 79.6
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.9e-128 463.8 506 55.9
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 3.0e-126 456.4 324 75.9
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.3e-124 451.1 448 60.3
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.3e-124 451.1 448 60.3
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 3.6e-111 406.4 270 82.2
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 7.5e-109 398.7 282 76.2
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.0e-106 390.6 239 83.7
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 8.1e-103 378.6 285 73.7
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 2.3e-102 377.1 309 70.6
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 4.6e-98 362.8 341 63.0
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 2.0e-93 347.4 238 80.3
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.1e-83 315.1 298 62.4
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 1.1e-80 305.1 243 70.8
Peaxi162Scf00238g00149 Petunia axillaris HOM05D001987 ORTHO05D006514 2.4e-78 297.4 190 81.1
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 1.3e-76 291.6 250 65.2
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 1.3e-73 281.6 661 37.5
BraSC48t46240Z Brassica rapa HOM05D001987 ORTHO05D006514 4.5e-69 266.5 154 89.0
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 2.4e-62 244.2 177 76.3
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 2.5e-59 234.2 299 49.8
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 1.0e-57 228.8 159 76.1
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.8e-55 220.7 271 49.8
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 5.0e-52 209.9 135 79.3
BraSC48t46330Z Brassica rapa HOM05D001987 ORTHO05D006514 2.7e-50 204.1 103 99.0
Eucgr.J02744 Eucalyptus grandis HOM05D001987 ORTHO05D006514 6.7e-49 199.5 116 87.1
Nitab4.5_0000334g0030 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.2e-47 194.5 225 56.0
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 8.2e-47 192.6 267 47.2
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 7.7e-45 186.0 135 76.3
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 9.7e-40 169.1 151 60.9
Nitab4.5_0009703g0120 Nicotiana tabacum HOM05D001987 ORTHO05D006514 6.3e-39 166.4 175 57.1
Nitab4.5_0010565g0030 Nicotiana tabacum HOM05D000040 ORTHO05D000759 2.6e-37 161.0 106 75.5
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 6.1e-34 149.8 91 83.5
Pp3c2_23480 Physcomitrium patens HOM05D001987 ORTHO05D006514 6.1e-34 149.8 532 30.8
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 2.4e-30 137.9 145 57.9
Nitab4.5_0000309g0220 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.1e-30 137.1 91 75.8
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 5.9e-29 133.3 173 52.0
Nitab4.5_0000309g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.9e-28 131.0 92 77.2
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.9e-28 131.0 210 41.9
EL10Ac1g01304 Beta vulgaris HOM05D001987 ORTHO05D006514 2.1e-26 124.8 84 75.0
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 6.7e-25 119.8 109 66.1
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 4.5e-21 107.1 87 71.3
TPR.G21771 Trifolium pratense HOM05D001987 ORTHO05D006514 7.7e-21 106.3 93 62.4
Nitab4.5_0000334g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.5e-19 102.1 110 50.9
Solyc08g045870.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.6e-18 98.6 68 77.9
SHI01963 Sapria himalayana HOM05D001987 ORTHO05D006514 1.4e-17 95.5 98 56.1
SHI01961 Sapria himalayana HOM05D001987 ORTHO05D006514 2.3e-17 94.7 251 33.1
Nitab4.5_0011784g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.0e-16 91.7 62 74.2
Solyc05g045770.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.7e-16 90.1 74 64.9
CAN.G1542.10 Capsicum annuum HOM05D001987 ORTHO05D006514 2.4e-14 84.7 101 48.5
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 5.4e-14 83.6 60 71.7
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.1e-14 82.8 65 69.2
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.2e-13 82.4 57 75.4
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 3.5e-13 80.9 53 79.2
Nitab4.5_0007962g0010 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.5e-13 80.5 57 78.9
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 1.0e-12 79.3 63 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 1.3e-12 79.0 124 38.7
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.7e-12 78.6 68 64.7
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 1.1e-11 75.9 63 63.5
Solyc12g035815.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.5e-11 75.5 111 44.1
SGA_v2.0_scaffold245G44435 Striga asiatica HOM05D001987 ORTHO05D006514 1.6e-10 72.0 38 89.5
Solyc05g045828.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.1e-10 71.6 46 80.4
Lsat_1_v5_gn_4_178801 Lactuca sativa HOM05D001987 ORTHO05D006514 3.6e-10 70.9 61 60.7
Nitab4.5_0001761g0040 Nicotiana tabacum HOM05D001987 ORTHO05D015637 4.7e-10 70.5 35 91.4
Solyc05g045822.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.7e-10 70.5 51 66.7
Solyc05g045824.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.3e-09 68.2 63 60.3
Lalb_Chr19g0127771 Lupinus albus HOM05D001987 ORTHO05D006514 1.5e-08 65.5 47 70.2
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.7e-07 62.0 42 73.8
Nitab4.5_0000309g0210 Nicotiana tabacum HOM05D001987 ORTHO05D015637 2.2e-07 61.6 36 80.6
SHI11171 Sapria himalayana HOM05D001987 ORTHO05D006514 2.8e-07 61.2 125 41.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 2.8e-07 61.2 167 29.9
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 2.8e-07 61.2 167 29.9
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 8.3e-07 59.7 172 28.5
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 8.3e-07 59.7 40 72.5
Solyc05g045826.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.8e-06 58.5 87 48.3
SHI11170 Sapria himalayana HOM05D001987 ORTHO05D006514 2.4e-06 58.2 49 67.3


User provided reference genes

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