Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.7e-32 142.1 74 100.0
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.7e-32 142.1 74 100.0
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 1.7e-32 142.1 74 100.0
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.7e-32 142.1 74 100.0
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 98.6
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 1.2e-30 136.0 74 95.9
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 4.6e-30 134.0 70 98.6
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 94.6
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 90.5
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-29 132.5 74 91.9
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.7e-29 132.1 74 93.2
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 3.0e-29 131.3 74 90.5
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 3.0e-29 131.3 74 90.5
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.1e-29 130.6 74 90.5
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 5.1e-29 130.6 74 87.8
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 5.1e-29 130.6 74 87.8
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 5.1e-29 130.6 74 90.5
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 89.2
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 89.2
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 90.5
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 90.5
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 90.5
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 90.5
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 89.2
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 90.5
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 91.9
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 91.9
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 91.9
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 91.9
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-28 129.0 74 89.2
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-28 129.0 74 89.2
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-28 129.0 74 89.2
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 89.2
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 89.2
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 89.2
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 2.5e-28 128.3 74 87.8
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 74 89.2
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 74 89.2
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 74 89.2
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 74 89.2
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 4.3e-28 127.5 74 89.2
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.6e-28 127.1 74 89.2
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 7.3e-28 126.7 74 90.5
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 7.3e-28 126.7 74 89.2
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.6e-28 126.3 74 87.8
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 1.3e-27 125.9 74 86.5
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.6e-27 125.6 74 87.8
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.1e-27 125.2 74 86.5
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 3.6e-27 124.4 74 87.8
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 6.2e-27 123.6 75 86.7
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 2.4e-26 121.7 75 85.3
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.1e-26 121.3 74 83.8
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 3.1e-26 121.3 74 85.1
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 4.0e-26 120.9 69 89.9
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-26 120.9 74 85.1
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 5.3e-26 120.6 85 78.8
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.0e-26 119.8 74 85.1
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-25 118.6 71 84.5
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.6e-25 118.2 74 85.1
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.6e-25 118.2 74 83.8
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 2.6e-25 118.2 66 87.9
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 3.4e-25 117.9 75 84.0
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 4.4e-25 117.5 74 81.1
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.6e-25 116.7 74 82.4
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 7.6e-25 116.7 74 79.7
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 9.9e-25 116.3 74 82.4
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.3e-24 115.9 74 82.4
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 2.2e-24 115.2 74 81.1
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 3.8e-24 114.4 72 81.9
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.9e-24 114.0 64 89.1
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.9e-24 114.0 64 89.1
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.9e-24 114.0 64 89.1
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.9e-24 114.0 64 89.1
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.9e-24 114.0 64 89.1
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.4e-24 113.6 74 82.4
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 8.4e-24 113.2 74 79.7
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.4e-24 113.2 67 85.1
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 8.4e-24 113.2 74 79.7
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.1e-23 112.8 69 85.5
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-23 112.5 74 79.7
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.9e-23 112.1 61 93.4
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.9e-23 112.1 75 78.7
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 2.4e-23 111.7 72 83.3
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 3.2e-23 111.3 62 87.1
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.2e-23 110.9 67 85.1
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 4.2e-23 110.9 74 78.4
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 3.5e-22 107.8 74 79.7
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 6.0e-22 107.1 74 74.3
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 1.3e-21 105.9 63 87.3
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.3e-21 105.1 74 78.4
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 8.7e-21 103.2 58 87.9
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-19 99.4 55 89.1
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 1.3e-19 99.4 71 76.1
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 4.8e-19 97.4 51 92.2
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 4.8e-19 97.4 65 78.5
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.4e-18 95.9 51 92.2
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.4e-18 95.9 51 92.2
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-18 95.5 51 90.2
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.8e-18 95.5 52 88.5
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-18 95.5 51 90.2
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-18 95.5 51 90.2
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 3.1e-18 94.7 51 90.2
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 4.0e-18 94.4 61 78.7
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 9.0e-18 93.2 51 88.2
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.2e-17 92.8 51 90.2
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.2e-17 92.8 51 90.2
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 1.5e-17 92.4 45 97.8
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 2.0e-17 92.0 72 66.7
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 2.6e-17 91.7 61 75.4
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.4e-17 91.3 51 88.2
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 3.4e-17 91.3 51 88.2
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 4.5e-17 90.9 50 90.0
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 9.9e-17 89.7 51 84.3
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 2.2e-16 88.6 74 66.2
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.2e-16 88.6 51 88.2
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 8.4e-16 86.7 54 83.3
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 8.4e-16 86.7 51 84.3
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 2.4e-15 85.1 53 79.2
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 4.2e-15 84.3 40 100.0
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 1.6e-14 82.4 42 92.9
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 3.5e-14 81.3 43 88.4
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 1.0e-13 79.7 42 88.1
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 1.0e-13 79.7 66 62.1
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 3.0e-13 78.2 37 100.0
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.6e-11 72.4 38 89.5
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 53.3
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 1.2e-09 66.2 36 88.9
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 2.6e-09 65.1 43 76.7
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 1.0e-08 63.2 35 88.6
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.3e-08 62.8 45 66.7
Glyma.19G056032 Glycine max HOM05D000580 ORTHO05D006815 5.5e-07 57.4 32 93.8
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 7.1e-07 57.0 38 76.3
Migut.D01365 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.6e-06 55.8 28 96.4
EL10As4g23447 Beta vulgaris HOM05D000580 ORTHO05D006815 2.1e-06 55.5 37 73.0
Potri.011G074742 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.6e-06 54.3 32 93.8


User provided reference genes

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