Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1484.2 755 100.0
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1419.1 758 95.3
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1376.7 759 92.2
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1344.3 757 90.9
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1338.9 759 90.0
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1284.2 756 87.2
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1261.9 756 85.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1261.1 758 85.9
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1257.7 756 85.6
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1257.3 758 85.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1254.6 758 85.5
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 0.0e+00 1217.6 754 83.3
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 0.0e+00 1208.4 758 82.5
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1198.3 656 92.4
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1125.9 759 75.6
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1124.4 758 75.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1113.2 759 75.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1110.9 767 74.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1107.8 752 75.1
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1107.0 752 76.1
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1101.3 756 75.1
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1100.5 753 74.8
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1097.4 755 75.0
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 762 74.1
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1085.5 755 73.2
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1084.7 757 73.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 0.0e+00 1084.7 753 74.5
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1084.7 758 73.7
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1083.9 753 73.7
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 0.0e+00 1078.9 752 73.9
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 752 74.2
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.6e-311 1071.6 753 73.0
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 753 73.3
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 5.1e-310 1067.4 753 73.3
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.7e-310 1066.6 755 74.0
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.5e-309 1065.8 751 73.5
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 7.4e-309 1063.5 750 72.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 752 72.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 750 72.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 754 72.1
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 751 72.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.5e-305 1050.4 762 73.0
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 6.5e-305 1050.4 796 69.2
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.5e-304 1048.5 754 72.9
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 7.1e-304 1047.0 752 71.5
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 9.3e-304 1046.6 790 69.5
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.2e-303 1046.2 760 71.6
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 3.5e-303 1044.6 749 72.9
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.6e-303 1044.3 753 72.2
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.3e-302 1042.0 760 71.6
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 5.1e-302 1040.8 752 71.5
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 5.1e-302 1040.8 757 71.9
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 8.7e-302 1040.0 762 71.4
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 753 71.3
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.3e-301 1037.7 759 71.0
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 751 71.9
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.3e-300 1036.2 753 71.6
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.6e-300 1035.8 747 72.2
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 756 71.4
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 751 71.2
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 759 71.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 788 69.4
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 8.2e-300 1033.5 756 70.1
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 8.2e-300 1033.5 755 70.3
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.1e-299 1033.1 796 68.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 3.1e-299 1031.6 750 70.4
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 5.3e-299 1030.8 752 70.5
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 9.0e-299 1030.0 755 71.5
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 753 71.4
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 754 71.0
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.7e-297 1025.8 759 70.9
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 2.2e-297 1025.4 757 71.1
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 6.5e-297 1023.8 758 71.1
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.2e-296 1021.1 755 71.7
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.8e-294 1015.8 742 71.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 783 68.8
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 753 70.4
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.7e-293 1010.0 755 71.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 754 68.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 3.1e-291 1005.0 765 68.5
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 4.1e-291 1004.6 773 68.3
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.1e-288 996.5 700 73.6
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.3e-286 988.8 751 67.1
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.2e-284 982.2 748 67.0
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.8e-284 981.9 751 67.8
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 9.1e-283 976.9 721 71.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 9.7e-277 956.8 716 69.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.8e-275 952.6 752 67.7
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.3e-273 946.4 654 74.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.2e-273 945.7 701 69.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 5.7e-269 931.0 656 74.4
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.0e-262 908.7 841 58.7
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.3e-246 855.9 754 60.5
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.4e-244 847.8 751 58.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 9.5e-232 807.4 538 76.2
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-227 792.7 725 60.0
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 6.8e-222 774.6 556 71.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.0e-217 760.8 505 77.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.6e-216 755.0 561 69.2
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 7.6e-213 744.6 613 65.4
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.9e-187 660.2 519 67.1
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 7.4e-184 648.3 627 55.8
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.3e-180 637.5 693 53.7
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.9e-172 609.8 426 71.4
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 5.7e-168 595.5 467 66.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.8e-167 593.2 428 71.0
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.2e-159 567.0 426 68.8
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.5e-149 532.7 424 65.1
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.4e-142 510.4 428 59.8
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.4e-142 510.4 427 60.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 3.0e-137 493.4 402 64.2
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.7e-127 461.1 372 64.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 7.0e-126 455.7 372 63.7
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.9e-125 452.6 504 53.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.3e-100 370.9 223 83.9
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-91 342.0 261 70.1
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.1e-89 335.5 230 75.2
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 3.3e-67 260.8 230 59.6
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 8.2e-66 256.1 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 6.9e-65 253.1 169 74.6
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.4e-60 238.8 140 86.4
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 7.4e-51 206.5 304 41.8
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.2e-50 204.9 141 71.6
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 5.3e-49 200.3 156 66.0
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.7e-48 196.4 132 75.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 2.3e-44 184.9 309 42.7
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 5.2e-44 183.7 190 51.1
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 5.7e-43 180.3 106 85.8
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.7e-42 178.7 101 84.2
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 7.5e-35 153.3 137 62.8
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 9.7e-35 152.9 291 36.8
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.8e-34 151.4 148 55.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 4.8e-34 150.6 93 81.7
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.0e-32 145.2 143 54.5
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 4.4e-27 127.5 93 68.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.7e-26 124.4 86 70.9
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.9e-22 112.1 132 50.8
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 7.2e-22 110.2 96 59.4
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 8.9e-20 103.2 142 50.7
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 5.7e-19 100.5 71 69.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.0e-16 92.0 52 84.6
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.0e-16 92.0 56 71.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.5e-16 90.9 53 83.0
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.3e-15 88.6 56 67.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 6.6e-15 87.0 52 78.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 5.6e-14 84.0 188 35.6
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 6.8e-12 77.0 73 58.9
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 8.9e-12 76.6 121 37.2
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.3e-10 72.8 112 42.0
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.2e-08 66.2 36 91.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.3e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.3e-06 57.8 29 96.6
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 5.6e-06 57.4 52 61.5


User provided reference genes

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