Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 8.9e-72 273.5 136 100.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 4.4e-63 244.6 133 91.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.2e-62 242.3 136 88.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 87.5
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 87.5
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 87.5
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 8.4e-62 240.4 136 86.8
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 86.8
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 86.0
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.9e-61 239.2 136 86.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.4e-61 238.8 132 88.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 4.1e-61 238.0 132 87.9
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.1e-61 238.0 132 87.9
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.2e-60 236.5 132 87.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 2.1e-60 235.7 136 84.6
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 84.6
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 83.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 9.6e-58 226.9 135 82.2
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 82.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.1e-56 223.4 136 80.9
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 81.6
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 5.2e-56 221.1 136 80.9
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 5.2e-56 221.1 136 80.9
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.2e-56 221.1 136 79.4
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 6.9e-56 220.7 136 79.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.5e-55 219.5 132 80.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 80.1
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-55 219.2 136 79.4
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.4e-55 218.4 136 78.7
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.4e-55 218.4 132 80.3
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.4e-55 218.4 132 80.3
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.4e-55 218.0 134 79.9
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 4.4e-55 218.0 129 82.9
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.4e-55 218.0 129 82.9
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.4e-55 218.0 129 82.9
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 4.4e-55 218.0 129 82.9
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 7.6e-55 217.2 132 81.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 7.6e-55 217.2 136 79.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 7.6e-55 217.2 136 77.9
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 9.9e-55 216.9 136 79.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.9e-55 216.9 129 82.2
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 9.9e-55 216.9 130 81.5
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.3e-54 216.5 136 78.7
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-54 216.5 133 81.2
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.7e-54 216.1 136 78.7
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-54 216.1 127 82.7
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.2e-54 215.7 132 79.5
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.2e-54 215.7 136 78.7
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 2.2e-54 215.7 132 79.5
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.8e-54 214.9 129 82.2
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 3.8e-54 214.9 136 78.7
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 4.9e-54 214.5 132 80.3
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 4.9e-54 214.5 136 77.9
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 4.9e-54 214.5 129 81.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.9e-54 214.5 132 79.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-54 214.5 129 82.2
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.1e-53 213.4 132 78.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 79.4
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 79.4
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.1e-53 213.4 132 78.8
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 77.9
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 77.9
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.4e-53 213.0 136 77.2
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.4e-53 213.0 129 81.4
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.9e-53 212.6 130 81.5
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-53 212.2 136 77.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.2e-53 211.8 133 79.7
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.2e-53 211.8 136 77.2
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 4.2e-53 211.5 136 76.5
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 7.1e-53 210.7 136 77.2
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.3e-53 210.3 136 76.5
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 9.3e-53 210.3 133 77.4
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.6e-52 209.5 136 77.2
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.1e-52 209.1 136 76.5
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.7e-52 208.8 129 79.1
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 2.7e-52 208.8 136 76.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.7e-52 208.8 136 77.2
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.7e-52 208.8 136 76.5
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 2.7e-52 208.8 136 76.5
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 3.5e-52 208.4 131 77.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 3.5e-52 208.4 136 75.7
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 4.6e-52 208.0 136 77.2
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 6.0e-52 207.6 136 73.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.0e-52 207.6 136 76.5
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 6.0e-52 207.6 137 75.9
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.8e-52 207.2 136 75.7
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 2.3e-51 205.7 136 75.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 3.0e-51 205.3 136 75.7
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 6.6e-51 204.1 136 75.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 8.7e-51 203.8 127 77.2
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.5e-50 203.0 134 73.9
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-50 202.6 130 75.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.9e-50 202.6 138 73.2
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-50 202.2 152 69.1
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 5.6e-50 201.1 138 72.5
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 9.6e-50 200.3 125 77.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.6e-49 199.5 128 74.2
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.4e-48 195.7 136 69.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.4e-47 191.8 168 62.5
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 9.9e-47 190.3 168 61.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 9.9e-47 190.3 136 67.6
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 9.9e-47 190.3 129 71.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.9e-46 188.7 136 66.9
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 8.4e-46 187.2 185 55.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 7.1e-45 184.1 200 52.0
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 6.0e-44 181.0 102 84.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.3e-43 179.1 132 59.8
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 6.7e-43 177.6 136 69.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 7.4e-42 174.1 137 67.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.0e-40 168.3 133 57.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.9e-40 167.5 129 69.8
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.7e-38 162.9 132 59.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 3.8e-38 161.8 123 60.2
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 8.4e-38 160.6 130 57.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.3e-35 153.3 127 63.0
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.0e-35 152.1 144 61.1
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.3e-33 146.7 114 62.3
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 6.9e-32 141.0 79 82.3
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 7.6e-31 137.5 93 76.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-30 135.6 80 77.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.1e-29 133.7 87 77.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-29 133.3 80 77.5
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.5e-29 132.5 86 76.7
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.2e-29 132.1 87 74.7
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.1e-29 131.0 97 68.0
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.5e-28 128.6 87 72.4
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-27 126.7 136 56.6
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 3.9e-27 125.2 89 70.8
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.1e-27 124.8 92 68.5
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 8.7e-27 124.0 89 69.7
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 8.7e-27 124.0 89 69.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.7e-26 121.3 75 74.7
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 9.7e-26 120.6 105 63.8
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 4.8e-25 118.2 71 74.6
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-24 117.1 90 66.7
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-24 116.3 85 72.9
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.3e-24 114.8 68 76.5
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.2e-23 113.6 85 70.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 9.4e-21 104.0 65 72.3
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.6e-20 101.7 91 58.2
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.2e-17 92.8 91 54.9
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.8e-16 89.7 83 56.6
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 1.3e-14 83.6 46 78.3
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.0e-14 81.6 45 77.8
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 2.1e-12 76.3 56 69.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.2e-09 64.3 42 76.2
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-08 63.2 57 57.9
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 4.1e-08 62.0 41 68.3


User provided reference genes

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