Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 1.4e-273 945.7 488 100.0
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 4.7e-264 914.1 488 93.0
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 3.3e-241 838.2 488 86.3
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.9e-233 812.4 488 84.4
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 3.4e-230 801.6 490 83.3
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 3.4e-230 801.6 490 83.3
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 2.9e-229 798.5 497 82.3
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 3.9e-226 788.1 488 82.6
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.7e-213 746.1 490 81.2
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 9.6e-209 730.3 488 80.9
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 3.8e-205 718.4 489 74.4
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.1e-204 716.8 425 83.3
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 4.3e-201 704.9 491 76.2
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 4.8e-200 701.4 489 77.7
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.8e-175 619.8 488 66.6
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.2e-174 617.1 487 64.7
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 3.4e-174 615.5 489 64.6
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.7e-173 613.2 535 62.2
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.2e-173 612.8 489 64.2
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 3.0e-170 602.4 489 62.6
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.5e-166 590.1 488 63.9
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.6e-166 589.3 504 59.3
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 3.4e-166 589.0 486 64.4
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.7e-165 586.6 488 64.1
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 2.9e-165 585.9 488 64.5
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 3.8e-165 585.5 490 61.8
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 5.0e-165 585.1 492 62.2
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 8.5e-165 584.3 561 55.6
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.9e-164 583.2 488 62.7
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 2.5e-164 582.8 486 60.3
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 7.2e-164 581.3 490 60.8
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 1.2e-163 580.5 492 62.8
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 7.9e-163 577.8 466 63.5
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 3.0e-162 575.9 499 62.1
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 5.1e-162 575.1 488 62.1
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.1e-161 573.9 495 61.8
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 2.5e-161 572.8 556 56.3
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 4.3e-161 572.0 486 62.8
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 1.3e-160 570.5 543 56.7
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.1e-159 567.4 486 62.8
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.1e-159 567.4 488 62.9
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 9.1e-159 564.3 486 63.2
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 9.1e-159 564.3 502 61.8
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 4.5e-158 562.0 486 60.9
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 7.7e-158 561.2 493 63.1
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.7e-157 560.1 488 61.7
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.7e-157 560.1 488 60.9
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 6.5e-157 558.1 486 60.3
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 8.5e-157 557.8 487 59.3
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 3.2e-156 555.8 491 60.9
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 5.5e-156 555.1 487 61.2
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.6e-155 553.5 457 62.6
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.6e-155 553.5 422 65.6
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 3.6e-155 552.4 384 68.8
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 6.1e-155 551.6 488 63.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.8e-154 550.1 547 55.0
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 2.0e-153 546.6 412 67.7
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 3.7e-152 542.3 493 60.9
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 6.3e-152 541.6 486 60.1
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 2.4e-151 539.7 386 68.1
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 4.1e-151 538.9 488 61.3
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 5.3e-151 538.5 571 51.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 1.6e-150 537.0 488 58.4
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.0e-150 536.6 496 60.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 4.5e-150 535.4 500 59.0
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.0e-149 534.3 386 67.1
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 2.2e-149 533.1 504 58.9
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 2.9e-149 532.7 487 60.4
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 3.8e-149 532.3 497 60.6
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.9e-148 530.0 487 59.3
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 5.5e-148 528.5 498 59.2
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.8e-146 523.5 487 58.9
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 4.0e-146 522.3 391 65.2
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.3e-144 517.3 548 53.1
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 1.7e-144 516.9 487 58.5
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.7e-144 516.9 390 64.9
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.2e-144 516.5 487 54.0
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.8e-144 516.2 412 63.1
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.8e-144 516.2 515 53.2
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 3.7e-144 515.8 493 59.4
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 2.7e-142 509.6 386 65.0
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 6.5e-141 505.0 488 58.0
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.1e-140 504.2 487 58.1
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 2.3e-138 496.5 491 54.2
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 5.2e-138 495.4 506 53.8
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.0e-137 493.4 407 60.0
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 5.7e-137 491.9 386 62.7
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.8e-135 486.9 487 55.4
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 4.1e-135 485.7 491 56.2
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.2e-129 467.6 412 61.9
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 2.6e-129 466.5 592 46.6
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 8.3e-128 461.5 412 60.0
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 2.4e-127 459.9 597 45.2
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 7.7e-126 454.9 378 61.6
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.8e-125 452.6 486 53.1
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 3.8e-125 452.6 328 71.0
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 2.0e-121 440.3 488 51.2
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.7e-120 437.2 442 56.6
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.7e-115 419.1 412 56.8
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 8.0e-115 418.3 412 57.0
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 4.4e-113 412.5 509 49.1
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 3.2e-111 406.4 405 52.6
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.3e-109 401.0 412 54.4
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 2.5e-108 396.7 283 66.4
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 3.6e-107 392.9 428 52.6
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 8.1e-107 391.7 415 53.0
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.2e-102 377.9 487 48.5
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 6.0e-102 375.6 486 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 6.2e-99 365.5 412 50.7
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 3.8e-88 329.7 401 45.1
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 3.2e-79 300.1 298 54.0
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 4.9e-72 276.2 248 55.6
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 1.9e-71 274.2 221 70.6
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 4.6e-70 269.6 250 58.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 6.7e-69 265.8 455 35.8
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.1e-66 256.9 446 39.0
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 3.1e-66 256.9 446 39.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.1e-55 221.9 237 54.9
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-55 221.5 240 52.1
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 4.2e-55 219.9 472 31.8
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 5.1e-53 213.0 238 51.3
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 4.3e-52 209.9 144 68.8
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 3.1e-50 203.8 240 46.2
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 4.1e-42 176.8 263 44.1
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 9.1e-42 175.6 210 48.6
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 7.9e-38 162.5 206 48.1
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.7e-35 153.7 155 52.9
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 4.1e-34 150.2 399 34.6
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 1.0e-32 145.6 338 35.5
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 6.1e-30 136.3 81 72.8
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 6.7e-29 132.9 405 26.7
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-28 132.1 112 61.6
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 5.7e-28 129.8 75 76.0
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.3e-27 128.6 230 32.6
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.4e-26 124.4 77 67.5
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.5e-23 115.2 386 24.6
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.5e-23 115.2 383 26.6
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-21 108.6 67 70.1
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.2e-20 105.5 410 26.1
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.2e-20 105.5 410 26.1
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 3.4e-20 104.0 389 25.7
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 3.4e-20 104.0 389 25.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.8e-18 98.2 76 59.2
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.1e-18 97.4 396 23.2
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 3.8e-16 90.5 523 22.8
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 6.5e-16 89.7 100 46.0
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 8.6e-16 89.4 472 22.7
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 5.5e-15 86.7 528 21.8
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 7.2e-15 86.3 519 22.2
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 1.2e-14 85.5 519 22.4
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 2.1e-14 84.7 519 21.8
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 2.8e-14 84.3 518 21.0
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 2.8e-14 84.3 518 21.6
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 4.7e-14 83.6 519 21.4
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 4.7e-14 83.6 519 21.4
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 4.7e-14 83.6 519 21.4
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 1.0e-13 82.4 527 21.4
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 8.8e-13 79.3 518 20.7
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 8.8e-13 79.3 395 24.8
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 8.8e-13 79.3 39 84.6
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 3.4e-12 77.4 515 21.6
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 5.7e-12 76.6 54 63.0
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-11 74.7 53 62.3
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 2.8e-11 74.3 253 25.3
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 4.9e-11 73.6 526 21.1
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 1.1e-10 72.4 51 62.7
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 5.4e-10 70.1 386 24.9
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 3.8e-08 63.9 359 23.1
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 3.8e-08 63.9 384 22.1
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 8.6e-08 62.8 382 22.3
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 3.3e-07 60.8 383 23.0
Psat7g237960 Pisum sativum HOM05D005401 ORTHO05D006582 1.2e-06 58.9 41 63.4


User provided reference genes

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