Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 0.0e+00 1173.7 606 100.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 0.0e+00 1136.7 605 96.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 0.0e+00 1094.0 598 94.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 0.0e+00 1080.5 598 93.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 0.0e+00 1077.4 597 93.3
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.1e-312 1074.3 601 91.7
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.0e-309 1065.1 603 90.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.9e-308 1061.2 600 89.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-307 1058.9 601 90.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.2e-307 1057.7 601 89.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.2e-306 1055.8 601 90.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-305 1052.4 601 89.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-305 1052.4 601 89.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.4e-305 1052.4 601 89.5
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.8e-297 1025.4 601 86.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 4.9e-295 1017.3 623 85.4
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.4e-286 987.3 600 83.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.3e-284 981.9 600 84.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 2.6e-272 941.8 603 79.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 7.1e-270 933.7 603 79.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.6e-269 932.6 598 79.1
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 6.6e-268 927.2 603 78.4
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.5e-267 925.2 603 79.3
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.4e-265 919.5 609 78.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 6.8e-265 917.1 596 78.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.8e-265 917.1 603 77.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.9e-265 916.8 603 77.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.3e-263 912.9 596 77.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.7e-263 912.5 617 76.3
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.9e-263 911.8 596 77.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 6.4e-263 910.6 627 75.9
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.1e-262 909.8 599 77.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 5.4e-262 907.5 596 77.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.2e-261 906.4 597 77.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-261 906.4 595 76.8
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.6e-261 904.4 605 75.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.0e-260 903.3 587 78.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 8.7e-260 900.2 588 77.0
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.1e-258 895.6 651 72.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.8e-258 894.4 599 75.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.1e-258 893.6 605 75.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.1e-257 893.3 599 75.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.4e-257 892.1 479 95.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 2.4e-257 892.1 599 74.8
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.1e-257 891.7 604 75.3
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.1e-257 891.7 608 75.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 4.0e-257 891.3 604 75.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.0e-257 890.2 599 75.1
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.5e-256 889.4 599 74.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.6e-256 888.6 599 75.1
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.6e-256 888.6 604 75.2
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 3.4e-256 888.3 594 76.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.4e-256 888.3 594 75.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-255 885.9 597 76.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.7e-255 885.9 603 74.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.8e-255 884.8 599 74.5
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.8e-255 884.8 604 76.0
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.9e-254 882.5 599 73.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.9e-254 882.5 599 73.6
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.2e-254 881.7 597 74.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.2e-254 881.3 597 75.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 5.4e-254 880.9 604 75.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 5.4e-254 880.9 592 75.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.1e-254 880.6 594 75.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 9.3e-254 880.2 599 75.3
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.6e-253 877.9 604 74.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.0e-253 877.5 598 75.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 6.0e-253 877.5 600 74.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.3e-252 876.3 599 74.1
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.7e-252 875.9 603 74.6
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.3e-252 875.5 596 75.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 3.0e-252 875.2 593 74.7
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.1e-252 874.4 599 73.6
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 4.3e-251 871.3 597 75.0
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.3e-251 871.3 595 74.8
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.6e-251 870.2 597 74.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 9.6e-251 870.2 597 74.4
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 4.8e-250 867.8 597 74.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 4.8e-250 867.8 594 73.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.8e-250 867.8 591 74.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.2e-250 867.5 598 74.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-249 866.7 595 73.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.1e-249 866.7 609 72.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 4.0e-249 864.8 594 74.2
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 4.0e-249 864.8 572 77.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.0e-249 864.8 615 72.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-248 862.8 679 67.9
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.6e-248 862.1 598 74.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.4e-246 854.4 617 70.2
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 9.3e-246 853.6 660 67.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 6.0e-245 850.9 606 71.6
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 3.3e-243 845.1 566 76.0
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.3e-243 844.7 552 77.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 4.8e-242 841.3 601 70.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.8e-241 839.3 562 74.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.2e-239 832.4 608 70.7
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.2e-238 828.2 606 69.6
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 4.6e-237 824.7 596 69.6
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.6e-234 816.2 541 75.6
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-233 813.5 566 73.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.4e-233 812.4 600 69.7
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.5e-232 809.7 600 69.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.0e-231 807.0 546 74.2
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 5.0e-231 804.7 590 69.2
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.4e-230 803.1 590 68.8
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.9e-230 802.7 593 71.2
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 9.7e-227 790.4 430 92.6
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.0e-223 780.4 613 66.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.5e-219 765.8 636 64.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.4e-217 760.0 476 81.5
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 6.9e-217 757.7 648 61.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.6e-213 746.5 600 63.2
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.3e-210 736.9 503 74.2
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-210 735.7 590 64.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 5.3e-209 731.5 492 75.4
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 3.2e-206 722.2 585 64.1
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.2e-206 721.8 597 63.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.5e-192 675.6 553 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-175 620.9 608 54.1
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 6.6e-175 618.2 440 71.6
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.6e-175 618.2 503 65.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.3e-174 615.9 365 87.9
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.7e-168 596.3 590 52.0
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 7.5e-163 578.2 575 51.3
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.3e-150 535.8 429 64.6
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.9e-143 512.7 336 76.5
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.2e-138 496.9 601 46.1
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 3.4e-131 473.0 572 44.9
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.6e-128 464.2 419 58.5
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-125 454.1 286 80.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.0e-124 449.5 526 51.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.0e-116 421.8 330 66.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.3e-113 411.8 246 80.1
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 9.4e-105 385.2 281 70.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.1e-104 382.5 435 49.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.9e-83 312.8 321 55.5
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.8e-82 310.1 272 60.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-76 290.8 156 91.7
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.3e-74 285.0 671 31.7
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.2e-69 267.7 179 76.5
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.8e-68 264.6 551 33.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.3e-57 227.3 149 77.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.6e-56 223.8 153 74.5
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-42 179.1 102 85.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.9e-41 174.9 105 81.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.4e-39 168.7 628 26.4
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-34 152.1 96 79.2
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.3e-34 152.1 91 83.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.8e-32 144.4 186 43.5
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.8e-31 141.7 96 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-30 138.3 120 55.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.3e-21 109.0 629 24.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.2e-21 108.2 66 78.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 7.9e-19 99.8 85 63.5
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.0e-18 97.8 78 59.0
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 5.6e-17 93.6 193 33.2
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.2e-14 85.9 71 56.3
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.8e-13 80.9 49 75.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 4.9e-13 80.5 71 52.1
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.4e-13 79.7 95 50.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.9e-12 78.6 48 75.0
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.5e-09 68.2 59 64.4
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 9.6e-09 66.2 51 66.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.3e-08 65.9 51 66.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.0e-07 60.8 52 61.5


User provided reference genes

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