Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 8.7e-222 773.5 430 100.0
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 4.2e-208 728.0 430 94.9
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.5e-205 719.5 430 92.6
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.1e-203 713.4 430 91.6
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 3.1e-203 711.8 430 89.8
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 5.8e-202 707.6 424 92.2
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 1.0e-198 696.8 440 88.6
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 1.9e-197 692.6 434 89.2
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 3.3e-197 691.8 431 89.1
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 3.3e-197 691.8 434 88.9
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 1.2e-191 673.3 428 79.4
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 3.6e-191 671.8 428 79.4
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.0e-185 653.7 434 75.3
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 2.7e-159 565.8 434 73.5
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.0e-158 563.9 433 73.7
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 3.0e-158 562.4 433 73.4
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.2e-157 560.5 433 73.2
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 2.0e-157 559.7 433 73.7
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 2.0e-157 559.7 430 73.5
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 7.5e-157 557.8 434 73.5
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 3.7e-156 555.4 431 71.7
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 4.1e-155 552.0 431 72.9
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 4.1e-155 552.0 431 73.1
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 4.1e-155 552.0 434 72.4
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 5.4e-155 551.6 434 71.7
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 7.0e-155 551.2 435 72.6
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 1.1e-152 543.9 434 70.7
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 4.2e-152 542.0 435 69.7
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 4.2e-152 542.0 431 70.5
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 1.2e-151 540.4 434 71.4
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 2.3e-150 536.2 436 69.5
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 8.9e-150 534.3 426 72.5
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.5e-149 533.5 445 69.0
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 2.0e-149 533.1 436 68.8
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 2.0e-149 533.1 436 69.3
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 3.4e-149 532.3 438 70.1
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 4.4e-149 531.9 433 70.7
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 4.4e-149 531.9 431 70.3
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 5.7e-149 531.6 455 68.8
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 7.5e-149 531.2 436 69.5
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 3.7e-148 528.9 422 71.6
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 8.3e-148 527.7 454 59.5
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 1.1e-147 527.3 437 69.1
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.8e-147 526.6 434 70.5
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 4.1e-147 525.4 432 69.4
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 2.0e-146 523.1 451 58.1
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 2.0e-146 523.1 436 67.9
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 4.5e-146 521.9 433 64.7
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 7.8e-146 521.2 433 69.3
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 1.1e-144 517.3 440 66.6
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.1e-144 517.3 434 68.0
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 1.4e-142 510.4 431 67.3
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 4.0e-142 508.8 435 69.0
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 1.2e-141 507.3 437 66.8
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 9.8e-141 504.2 434 67.5
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 1.4e-139 500.4 406 71.4
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.2e-139 499.2 464 64.7
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.6e-138 496.9 406 70.2
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 2.0e-138 496.5 436 67.0
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 3.5e-138 495.7 437 63.2
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 3.5e-138 495.7 425 67.3
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 1.7e-137 493.4 431 66.1
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 1.5e-136 490.3 451 64.7
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 3.6e-135 485.7 437 65.9
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 3.6e-135 485.7 408 68.6
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 4.0e-134 482.3 437 56.8
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 1.7e-132 476.9 598 44.8
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 4.9e-132 475.3 557 47.6
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.1e-131 474.2 437 63.4
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 2.4e-131 473.0 469 53.7
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 3.2e-131 472.6 436 64.4
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 2.7e-130 469.5 430 63.3
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 3.0e-129 466.1 447 62.0
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 3.9e-129 465.7 430 63.3
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 8.6e-129 464.5 425 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 2.5e-128 463.0 433 54.0
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 2.8e-127 459.5 390 69.0
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.1e-126 457.6 394 57.9
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.7e-124 449.1 469 59.5
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 6.0e-122 441.8 462 52.2
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 3.3e-120 436.0 491 48.1
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 4.0e-118 429.1 334 73.1
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.7e-116 423.7 425 55.1
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 5.4e-115 418.7 332 64.2
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.7e-113 413.7 441 52.2
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 6.6e-113 411.8 386 64.0
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 9.9e-109 397.9 448 53.1
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 1.7e-105 387.1 425 57.6
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 3.9e-105 386.0 266 72.2
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.8e-95 353.2 430 50.9
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 3.2e-91 339.7 435 53.1
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.2e-77 294.7 292 65.1
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.9e-75 287.3 332 47.9
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 3.7e-71 273.1 263 56.7
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 6.3e-63 245.7 220 71.4
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.5e-61 241.1 239 54.8
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.1e-54 218.4 403 36.2
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.3e-52 211.5 142 70.4
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.1e-51 208.4 330 38.5
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.6e-48 197.2 189 61.9
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 2.2e-44 184.1 162 75.9
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.9e-43 181.0 188 64.9
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 1.6e-37 161.4 147 76.9
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 4.6e-29 133.3 171 46.8
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 1.2e-26 125.2 92 69.6
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 6.8e-25 119.4 139 48.2
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 4.4e-24 116.7 101 58.4
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 6.4e-23 112.8 113 48.7
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 5.4e-22 109.8 60 73.3
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 2.0e-21 107.8 122 54.9
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 1.1e-19 102.1 130 47.7
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.5e-19 101.7 58 70.7
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 9.5e-19 99.0 93 59.1
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 2.2e-15 87.8 62 66.1
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 2.9e-15 87.4 76 53.9
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 4.1e-14 83.6 82 54.9
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 9.2e-14 82.4 55 70.9
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 3.0e-12 77.4 50 70.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 5.1e-12 76.6 41 75.6
RcHm_v2.0_Chr5g0008731 Rosa chinensis HOM05D000836 ORTHO05D000709 8.1e-10 69.3 252 25.4
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 4.0e-09 67.0 200 24.5
FAN21G2139 Fragaria x ananassa HOM05D000836 ORTHO05D000709 8.9e-09 65.9 190 25.3
FvH4_3g08980 Fragaria vesca HOM05D000836 ORTHO05D000709 1.2e-08 65.5 246 25.2
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.5e-08 65.1 214 22.4
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 2.6e-08 64.3 167 24.6
FAN16G1410 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.6e-08 64.3 218 25.2
THA.LOC104801044 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 4.4e-08 63.5 193 26.9
Zm00001eb336880 Zea mays HOM05D000836 ORTHO05D000709 4.4e-08 63.5 293 25.3
QL02p086475 Quercus lobata HOM05D000836 ORTHO05D000709 7.6e-08 62.8 196 24.5
Rhsim02G0132200 Rhododendron simsii HOM05D000836 ORTHO05D000709 7.6e-08 62.8 214 26.2
Manes.15G045400 Manihot esculenta HOM05D003335 ORTHO05D003853 9.9e-08 62.4 206 22.8
Aa31LG5G4350 Aethionema arabicum HOM05D000836 ORTHO05D000709 1.3e-07 62.0 193 25.4
HanXRQChr01g0022981 Helianthus annuus HOM05D003335 ORTHO05D003853 1.3e-07 62.0 167 25.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.7e-07 61.6 213 24.9
Phvul.001G054700 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 2.9e-07 60.8 195 26.2
MSTRG.25865 Avicennia marina HOM05D000836 ORTHO05D000709 3.7e-07 60.5 191 27.2
Ca_12916_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 3.7e-07 60.5 195 25.1
HanXRQChr11g0342461 Helianthus annuus HOM05D003335 ORTHO05D003853 3.7e-07 60.5 203 25.1
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 3.7e-07 60.5 205 25.9
CDE06G0876 Ceratophyllum demersum HOM05D000645 ORTHO05D008274 4.9e-07 60.1 219 24.2
Lalb_Chr20g0121721 Lupinus albus HOM05D000836 ORTHO05D000709 4.9e-07 60.1 194 26.8
Lj4g0008004 Lotus japonicus HOM05D000836 ORTHO05D000709 6.4e-07 59.7 195 25.6
Phvul.009G096600 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 6.4e-07 59.7 191 25.7
PGR142G1073 Punica granatum HOM05D000836 ORTHO05D000709 6.4e-07 59.7 194 24.7
Gorai.010G256200 Gossypium raimondii HOM05D000836 ORTHO05D000709 8.4e-07 59.3 213 25.4
Lj4g0001690 Lotus japonicus HOM05D000836 ORTHO05D000709 8.4e-07 59.3 139 27.3
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 8.4e-07 59.3 40 67.5
QL12p031494 Quercus lobata HOM05D000836 ORTHO05D000709 8.4e-07 59.3 194 24.2
Lj5g0025520 Lotus japonicus HOM05D000836 ORTHO05D000709 1.1e-06 58.9 195 24.6
FAN17G0254 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.4e-06 58.5 217 22.1
FAN20G1644 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.4e-06 58.5 214 22.4
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 1.4e-06 58.5 201 23.9
TPR.G20092 Trifolium pratense HOM05D000836 ORTHO05D000709 1.4e-06 58.5 195 25.1
Ca_15707_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 1.9e-06 58.2 195 25.1
FvH4_2g34270 Fragaria vesca HOM05D002332 ORTHO05D002509 1.9e-06 58.2 214 22.4
SalBow4G2250 Salvia bowleyana HOM05D000836 ORTHO05D000709 1.9e-06 58.2 192 25.0
SMO116G0001 Selaginella moellendorffii HOM05D000836 ORTHO05D000709 1.9e-06 58.2 171 24.6
VMungo1309G0688 Vigna mungo HOM05D000836 ORTHO05D000709 1.9e-06 58.2 194 24.7
Lj4C739G4 Lonicera japonica HOM05D000921 ORTHO05D004782 2.4e-06 57.8 323 23.5
Medtr4g088625 Medicago truncatula HOM05D000836 ORTHO05D000709 2.4e-06 57.8 180 26.1
Psat5g028200 Pisum sativum HOM05D000836 ORTHO05D000709 2.4e-06 57.8 195 25.1
MSTRG.1643 Avicennia marina HOM05D000836 ORTHO05D000709 3.2e-06 57.4 172 25.6
Peaxi162Scf00545g00213 Petunia axillaris HOM05D000836 ORTHO05D000709 3.2e-06 57.4 201 23.9
Potri.018G033300 Populus trichocarpa HOM05D000836 ORTHO05D000709 3.2e-06 57.4 205 24.9
CANSAT25G0853 Cannabis sativa HOM05D000836 ORTHO05D000709 4.1e-06 57.0 202 24.8
Eucgr.C04148 Eucalyptus grandis HOM05D000836 ORTHO05D000709 4.1e-06 57.0 196 26.0
CANSAT56G1037 Cannabis sativa HOM05D000836 ORTHO05D000709 5.4e-06 56.6 202 24.8
Glyma.17G205700 Glycine max HOM05D000836 ORTHO05D000709 5.4e-06 56.6 195 25.1
CAN.G199.29 Capsicum annuum HOM05D000836 ORTHO05D000709 7.1e-06 56.2 209 24.9
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 7.1e-06 56.2 214 22.0
Gohir.D06G210166 Gossypium hirsutum HOM05D000836 ORTHO05D000709 7.1e-06 56.2 244 25.0
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 7.1e-06 56.2 120 30.8
Psat6g030760 Pisum sativum HOM05D000836 ORTHO05D000709 7.1e-06 56.2 195 24.6
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 7.1e-06 56.2 190 25.8
Lalb_Chr08g0243861 Lupinus albus HOM05D000836 ORTHO05D000709 9.2e-06 55.8 195 24.1


User provided reference genes

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