Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 4.0e-176 621.3 312 100.0
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 8.9e-160 567.0 325 87.4
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.2e-143 513.5 313 84.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.9e-138 496.1 313 80.5
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.8e-136 489.6 327 77.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 6.9e-136 487.6 313 78.6
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 4.9e-134 481.5 322 77.0
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.5e-133 479.2 324 77.2
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.5e-133 479.2 324 77.2
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-132 476.5 322 77.0
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.6e-132 476.5 322 76.1
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.8e-131 473.0 324 75.6
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.3e-123 446.0 325 72.3
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 9.4e-101 370.9 326 61.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.3e-97 360.5 313 61.0
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.7e-97 359.0 332 58.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.4e-96 357.1 329 55.9
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.4e-96 356.3 330 58.8
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.2e-95 354.0 336 57.4
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.2e-95 354.0 332 57.2
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.2e-95 354.0 329 55.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.7e-95 352.8 336 57.4
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.9e-95 351.7 331 55.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.7e-95 351.3 327 56.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 7.7e-95 351.3 332 56.3
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.0e-94 350.9 331 56.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.0e-94 350.9 326 56.1
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.0e-94 350.9 333 56.8
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.3e-94 350.5 332 58.1
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.3e-94 350.5 334 57.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.7e-94 350.1 329 57.8
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.7e-94 350.1 333 55.6
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.2e-94 349.7 327 56.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.9e-94 349.4 339 56.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 3.8e-94 349.0 339 56.9
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 5.0e-94 348.6 329 57.1
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 6.5e-94 348.2 332 58.7
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 8.5e-94 347.8 327 58.1
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.1e-93 347.4 335 57.6
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-93 347.4 331 56.5
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.1e-93 347.4 330 57.0
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.5e-93 346.3 335 55.8
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 2.5e-93 346.3 333 56.5
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 3.2e-93 345.9 332 57.2
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.2e-93 345.5 339 55.8
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 9.4e-93 344.4 336 57.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.2e-92 344.0 343 55.1
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 2.1e-92 343.2 337 56.1
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.7e-92 342.8 342 54.7
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 3.6e-92 342.4 340 54.4
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.1e-92 341.7 331 56.5
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.4e-91 340.5 332 55.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.4e-91 340.5 332 55.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.8e-91 340.1 350 53.4
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 4.0e-91 339.0 336 54.8
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 4.0e-91 339.0 333 55.3
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 6.8e-91 338.2 325 56.6
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 8.8e-91 337.8 336 56.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.2e-90 337.4 326 55.8
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.5e-90 337.0 338 55.9
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 2.0e-90 336.7 336 53.9
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 3.4e-90 335.9 336 53.3
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 4.4e-90 335.5 340 53.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 9.8e-90 334.3 334 56.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.3e-89 334.0 336 53.9
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.3e-89 334.0 332 53.3
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.3e-89 334.0 335 54.6
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.2e-89 333.2 316 56.3
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.1e-88 330.9 328 55.2
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.8e-88 330.1 371 49.6
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.4e-88 329.7 335 53.7
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.4e-88 329.7 324 56.8
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 7.0e-88 328.2 347 53.9
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.0e-87 326.6 311 55.9
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 5.9e-87 325.1 309 55.0
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 7.7e-87 324.7 359 51.8
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.0e-86 324.3 310 58.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.7e-86 323.6 333 54.7
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 6.5e-86 321.6 326 54.6
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.2e-85 318.2 332 53.9
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 9.5e-85 317.8 337 52.5
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.3e-83 313.2 327 53.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 6.8e-83 311.6 330 52.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 8.8e-83 311.2 338 52.4
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 2.0e-82 310.1 336 51.5
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.4e-82 309.3 299 55.9
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.0e-79 300.1 324 51.2
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 8.9e-75 284.6 297 52.9
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.0e-74 283.5 356 45.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 6.4e-73 278.5 329 50.5
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.4e-72 277.3 329 50.2
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 8.6e-70 268.1 355 44.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 7.3e-69 265.0 315 48.6
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.6e-68 263.8 330 44.5
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 2.1e-68 263.5 288 52.1
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.6e-68 262.7 303 50.8
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 4.7e-68 262.3 314 48.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 4.1e-64 249.2 240 56.2
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 7.0e-64 248.4 179 74.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 3.3e-61 239.6 269 50.2
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 4.4e-58 229.2 242 52.5
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 1.6e-52 210.7 462 32.9
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 6.2e-52 208.8 327 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 8.9e-51 204.9 312 40.1
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 3.4e-50 203.0 314 39.8
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 4.4e-42 176.0 131 64.9
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 5.8e-42 175.6 177 55.4
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 7.6e-42 175.3 155 57.4
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.1e-32 144.8 146 52.1
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 6.0e-31 139.0 125 55.2
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 6.0e-31 139.0 171 45.0
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 3.0e-30 136.7 174 47.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.1e-29 134.8 82 78.0
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.8e-28 129.4 102 59.8
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 5.5e-24 115.9 157 42.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.5e-17 92.4 58 75.9
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 6.5e-17 92.4 132 43.9
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 7.4e-13 79.0 68 51.5
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.2e-10 71.6 57 54.4
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 2.0e-10 70.9 82 50.0
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.9e-06 56.6 46 58.7


User provided reference genes

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