Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.4e-159 564.3 290 100.0
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 5.1e-149 531.2 290 93.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.3e-141 505.8 290 89.0
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 6.2e-139 497.7 290 88.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.4e-138 496.5 292 86.6
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.7e-133 479.6 291 86.6
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 8.1e-131 470.7 295 84.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 9.9e-129 463.8 294 81.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 84.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 84.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.5e-124 449.1 292 77.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 5.6e-124 448.0 292 77.7
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.3e-123 446.8 292 77.7
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.3e-123 446.8 292 77.7
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.1e-123 446.0 292 77.1
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 78.8
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 76.7
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.6e-123 445.3 292 77.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.8e-123 444.9 293 78.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.8e-122 443.0 290 80.3
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.0e-122 441.8 292 75.7
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 76.7
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 76.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.6e-121 439.1 292 75.3
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.4e-121 438.7 292 76.4
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.5e-121 438.3 292 74.3
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 5.8e-121 438.0 292 76.0
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.8e-121 438.0 292 75.0
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 75.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 9.9e-121 437.2 290 80.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-120 436.8 294 76.2
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.7e-120 436.4 292 77.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.7e-120 436.4 294 77.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.2e-120 436.0 292 76.0
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 3.8e-120 435.3 290 80.3
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 3.8e-120 435.3 290 74.8
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.9e-120 434.9 292 75.3
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 6.4e-120 434.5 290 75.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 6.4e-120 434.5 290 74.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 8.4e-120 434.1 306 72.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-119 433.7 291 76.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.1e-119 433.7 290 76.2
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.4e-119 433.3 291 76.3
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.2e-119 431.8 292 75.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 4.2e-119 431.8 292 76.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 7.1e-119 431.0 292 75.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.6e-118 429.9 292 74.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-118 428.3 290 74.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.6e-118 428.3 293 74.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 6.0e-118 427.9 292 75.3
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 3.0e-117 425.6 291 75.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-116 423.3 290 74.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.5e-116 423.3 291 74.9
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 1.9e-116 422.9 293 74.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 4.3e-116 421.8 323 69.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 5.6e-116 421.4 292 73.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.6e-116 421.4 279 78.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.6e-116 421.4 292 72.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.4e-116 421.0 290 74.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-115 419.9 291 74.6
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.8e-115 419.1 321 69.5
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.7e-115 418.7 326 66.9
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 4.8e-115 418.3 291 74.6
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 8.1e-115 417.5 292 72.9
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 8.1e-115 417.5 290 73.1
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.4e-114 416.8 292 73.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.4e-114 416.8 273 77.3
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.0e-113 412.9 292 71.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.6e-113 412.5 293 73.4
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 3.4e-113 412.1 291 72.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 5.8e-113 411.4 291 72.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.0e-112 410.6 292 71.6
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.3e-112 410.2 292 74.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.9e-112 408.3 290 71.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.4e-111 406.8 285 73.0
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 7.1e-111 404.4 293 72.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.2e-110 403.7 292 69.9
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.2e-110 403.7 290 71.4
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-110 403.3 322 67.1
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.6e-110 401.7 291 71.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.6e-110 401.7 292 69.9
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.3e-109 400.2 292 69.9
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.3e-109 400.2 291 70.4
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.8e-109 399.8 297 70.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-109 399.1 290 70.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 6.7e-109 397.9 292 70.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.5e-108 396.7 290 70.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.5e-108 396.7 268 74.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.3e-108 395.6 292 67.8
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.3e-108 395.2 292 70.9
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.8e-107 392.5 294 67.0
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.8e-107 392.5 291 69.4
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 3.7e-107 392.1 290 69.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 3.7e-107 392.1 290 69.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.7e-107 392.1 293 69.6
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 8.2e-107 391.0 293 69.6
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.4e-106 389.4 310 66.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.4e-106 389.4 308 66.6
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.4e-106 389.4 292 68.8
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-105 386.3 290 69.7
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.7e-104 383.3 236 80.9
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.5e-103 379.4 290 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 7.2e-103 377.9 291 69.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.1e-102 376.3 258 78.7
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.1e-100 370.5 297 66.0
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 5.7e-100 368.2 290 67.6
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 9.7e-100 367.5 289 67.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.6e-99 366.7 385 55.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.8e-99 365.2 292 64.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.4e-98 362.8 292 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.3e-98 361.7 293 65.5
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.2e-97 360.5 291 63.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 4.5e-97 358.6 291 66.3
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 4.2e-95 352.1 238 74.8
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.0e-93 345.9 291 61.5
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.4e-92 342.0 294 62.6
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.7e-91 340.1 191 85.3
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 9.1e-90 334.3 229 72.1
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-89 333.2 252 67.5
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 5.0e-88 328.6 238 70.6
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 7.2e-87 324.7 291 61.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.7e-83 312.4 298 58.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.1e-82 310.8 288 58.7
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.4e-82 309.7 292 59.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.9e-80 302.8 292 58.2
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.9e-80 302.8 283 56.9
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.1e-79 300.8 208 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.5e-76 288.1 191 72.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.7e-73 279.6 298 50.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.1e-71 274.2 210 66.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 5.5e-71 271.9 295 51.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.1e-70 270.0 188 70.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 5.9e-65 251.9 292 50.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-59 234.2 293 51.5
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-59 234.2 293 51.5
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.3e-59 234.2 293 51.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.5e-57 226.1 288 47.9
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.3e-51 204.9 262 50.8
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.6e-46 189.5 105 87.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 7.5e-44 181.8 108 81.5
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.7e-40 170.6 226 45.1
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.5e-39 164.9 154 58.4
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.8e-38 163.3 154 57.8
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.8e-38 163.3 154 57.8
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-35 154.5 149 57.7
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 7.8e-33 145.2 84 84.5
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.0e-32 143.3 188 42.6
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.3e-29 133.7 73 89.0
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.3e-29 133.7 73 89.0
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 8.9e-29 131.7 72 88.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.9e-23 114.0 68 80.9
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.5e-23 113.6 109 57.8
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.1e-22 110.5 93 65.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.1e-21 108.2 186 41.4
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.4e-20 103.2 107 54.2
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 7.6e-20 102.1 128 44.5
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.8e-19 99.8 60 75.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.9e-15 87.4 59 67.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.6e-14 83.2 231 30.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.6e-12 77.0 58 67.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 7.6e-12 75.5 86 51.2


User provided reference genes

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