Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.6e-186 656.0 348 100.0
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 2.7e-128 462.6 414 65.2
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 4.0e-124 448.7 414 65.5
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 8.8e-124 447.6 382 68.8
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.6e-120 436.8 409 61.6
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 2.7e-120 436.0 417 62.8
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 1.3e-119 433.7 414 61.6
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 1.3e-119 433.7 418 62.7
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 5.2e-116 421.8 420 61.7
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 4.0e-108 395.6 397 56.9
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 4.0e-108 395.6 397 56.9
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 5.2e-108 395.2 395 57.0
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.2e-107 394.0 396 54.8
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 1.5e-107 393.7 392 56.6
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 5.7e-107 391.7 397 56.4
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 9.8e-107 391.0 405 55.6
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 1.4e-105 387.1 389 56.0
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 1.8e-105 386.7 395 56.2
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 1.6e-104 383.6 397 53.4
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 2.0e-104 383.3 399 53.1
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 2.0e-104 383.3 399 53.1
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.0e-103 380.9 400 54.0
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.7e-103 380.2 400 53.2
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 2.3e-103 379.8 392 54.8
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 3.0e-103 379.4 413 55.4
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 3.9e-103 379.0 402 53.0
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 6.6e-103 378.3 402 55.2
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 8.6e-103 377.9 400 53.0
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-102 377.5 400 56.5
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 1.5e-102 377.1 397 53.7
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.9e-102 376.7 400 53.2
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 2.5e-102 376.3 404 56.4
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 2.5e-102 376.3 404 56.4
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 2.5e-102 376.3 393 57.0
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.5e-102 376.3 398 53.3
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 4.3e-102 375.6 386 54.4
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 9.5e-102 374.4 401 54.1
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 1.6e-101 373.6 399 57.6
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 2.1e-101 373.2 402 57.5
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 2.1e-101 373.2 389 53.2
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 2.8e-101 372.9 407 54.1
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 6.2e-101 371.7 397 54.4
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 8.0e-101 371.3 404 52.7
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 8.0e-101 371.3 396 54.3
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.4e-100 370.5 385 54.0
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 6.8e-100 368.2 401 54.1
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 6.8e-100 368.2 401 54.1
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 6.8e-100 368.2 403 53.8
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 6.8e-100 368.2 404 54.2
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 8.9e-100 367.9 395 51.6
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 8.9e-100 367.9 390 53.1
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 1.2e-99 367.5 396 54.5
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.5e-99 367.1 388 54.1
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.5e-99 367.1 388 54.1
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 2.0e-99 366.7 399 51.9
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 2.6e-99 366.3 402 52.2
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 2.6e-99 366.3 392 53.1
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 3.4e-99 365.9 392 53.1
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 3.4e-99 365.9 403 54.1
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 3.4e-99 365.9 394 53.8
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 4.4e-99 365.5 404 52.2
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 5.8e-99 365.2 399 51.6
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 7.5e-99 364.8 398 51.8
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 7.5e-99 364.8 395 53.7
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 9.8e-99 364.4 392 52.6
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.3e-98 364.0 403 51.9
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 2.2e-98 363.2 398 51.8
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 1.1e-97 360.9 392 53.1
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-97 360.9 392 53.1
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-97 360.9 392 53.1
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 1.9e-97 360.1 405 51.4
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.9e-97 360.1 396 52.0
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 3.2e-97 359.4 394 52.5
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 7.0e-97 358.2 397 51.9
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 7.0e-97 358.2 398 50.3
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.2e-96 357.5 281 66.2
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 2.7e-96 356.3 401 52.1
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 1.0e-95 354.4 398 54.8
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 1.0e-95 354.4 398 54.8
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 1.3e-95 354.0 393 51.1
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.3e-95 354.0 410 50.5
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 1.7e-95 353.6 400 52.8
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 2.3e-95 353.2 357 54.3
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 8.6e-95 351.3 395 50.9
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-94 350.9 398 54.8
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.1e-94 350.9 398 54.8
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.1e-94 350.9 402 50.5
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 2.5e-94 349.7 393 50.6
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 4.3e-94 349.0 398 50.0
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 1.2e-93 347.4 397 50.4
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 1.6e-93 347.1 380 52.4
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.6e-93 347.1 393 50.4
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 3.6e-93 345.9 402 50.2
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 4.7e-93 345.5 402 51.7
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 6.2e-93 345.1 376 53.5
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 6.2e-93 345.1 402 50.2
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.1e-92 344.4 400 52.0
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 2.3e-92 343.2 398 49.7
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 4.0e-92 342.4 402 49.8
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 4.0e-92 342.4 374 52.1
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 8.9e-92 341.3 399 49.4
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.0e-91 340.1 391 50.4
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 5.8e-91 338.6 398 50.3
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 2.9e-90 336.3 397 48.9
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 3.7e-90 335.9 392 50.8
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 4.9e-90 335.5 348 57.2
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 4.9e-90 335.5 402 48.8
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 6.4e-90 335.1 422 48.8
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-89 334.3 392 50.5
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.4e-89 334.0 371 51.8
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 2.4e-89 333.2 398 48.7
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 2.4e-89 333.2 398 48.7
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 2.4e-89 333.2 399 47.9
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 3.2e-89 332.8 397 48.6
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 5.4e-89 332.0 427 49.6
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.2e-88 330.9 387 50.9
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.6e-88 328.9 376 51.6
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.3e-87 327.4 399 47.4
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 3.9e-87 325.9 399 48.1
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 8.6e-87 324.7 378 51.6
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.1e-86 324.3 348 55.2
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.5e-86 323.2 358 52.2
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 5.6e-86 322.0 411 47.4
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.6e-85 320.5 342 56.1
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 3.6e-85 319.3 400 47.5
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 4.0e-84 315.8 408 45.1
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 2.0e-83 313.5 334 52.1
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.9e-82 309.7 398 47.5
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.2e-80 304.3 368 48.1
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.2e-80 304.3 376 47.3
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 6.0e-80 302.0 349 50.7
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.3e-79 300.8 361 48.8
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.1e-78 297.7 406 45.6
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.6e-77 293.9 394 44.2
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 2.1e-77 293.5 421 42.8
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 8.1e-77 291.6 329 52.3
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 7.6e-75 285.0 337 48.1
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 5.6e-70 268.9 341 47.5
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 7.3e-70 268.5 413 41.9
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 1.3e-69 267.7 366 42.3
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 3.8e-66 256.1 372 40.9
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 3.5e-64 249.6 295 53.6
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.3e-58 231.1 192 67.2
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 3.8e-58 229.6 366 38.3
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 1.0e-50 204.9 307 44.3
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 1.7e-50 204.1 290 43.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 4.2e-49 199.5 435 33.1
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.2e-48 198.0 248 45.2
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.7e-48 196.8 188 56.9
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.5e-46 191.0 235 50.2
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 1.5e-46 191.0 268 47.8
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 9.6e-46 188.3 179 53.6
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 1.3e-45 188.0 274 44.5
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.1e-45 187.2 137 69.3
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 4.8e-45 186.0 402 34.1
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 5.3e-44 182.6 101 85.1
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 6.9e-44 182.2 222 50.5
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 3.4e-43 179.9 227 49.3
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 6.1e-40 169.1 131 59.5
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 7.9e-40 168.7 386 33.7
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 2.3e-39 167.2 133 58.6
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 3.3e-38 163.3 131 64.9
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 6.3e-37 159.1 132 59.8
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-35 154.8 92 77.2
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.3e-34 151.4 158 51.9
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 2.9e-34 150.2 155 52.3
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 1.2e-32 144.8 189 52.9
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 1.0e-31 141.7 310 32.9
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 3.3e-30 136.7 91 68.1
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 6.9e-28 129.0 92 66.3
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.4e-25 121.3 103 58.3
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.4e-25 121.3 103 58.3
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 3.0e-23 113.6 108 48.1
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 5.2e-23 112.8 81 71.6
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 2.2e-21 107.5 74 64.9
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 4.1e-20 103.2 80 60.0
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 5.3e-20 102.8 78 66.7
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 2.9e-18 97.1 76 56.6
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 5.5e-17 92.8 77 64.9
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 8.0e-16 89.0 92 51.1
TAR625G1177 Trochodendron aralioides HOM05D003624 ORTHO05D004188 5.7e-14 82.8 84 53.6
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 4.8e-13 79.7 55 61.8
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 1.1e-12 78.6 66 51.5
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 9.1e-12 75.5 81 51.9
Ca_06299_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 5.2e-07 59.7 133 35.3


User provided reference genes

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