Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.3e-242 842.8 481 100.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 8.2e-213 743.8 484 90.5
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.3e-194 683.3 484 83.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.8e-188 662.9 488 76.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.7e-184 648.3 489 79.3
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 3.1e-175 619.0 482 77.6
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 5.2e-175 618.2 482 77.4
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-172 609.8 485 75.9
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.1e-172 608.6 480 76.0
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-171 606.3 459 78.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.7e-170 603.2 482 73.9
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-169 599.4 482 75.9
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.8e-167 591.3 479 73.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.0e-163 578.2 485 63.3
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.3e-161 572.0 487 64.5
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.8e-160 569.3 482 62.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.6e-160 568.9 482 69.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.4e-159 566.2 486 63.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.6e-158 562.8 478 69.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.4e-158 562.4 478 63.0
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.9e-157 558.5 484 69.6
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.4e-157 557.8 488 68.0
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-151 540.8 471 69.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.4e-148 529.6 486 67.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.4e-148 529.6 486 67.7
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 9.3e-148 527.7 471 66.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.0e-146 524.2 486 66.5
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.5e-145 519.6 485 64.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.6e-145 518.5 480 64.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.6e-145 517.7 487 63.0
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.6e-144 516.9 486 61.9
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.1e-144 516.5 486 61.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.8e-144 516.2 463 62.6
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 8.1e-144 514.6 478 60.5
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.0e-143 512.3 463 62.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.9e-143 511.5 463 60.7
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 2.6e-142 509.6 490 64.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 3.4e-142 509.2 486 63.6
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 7.6e-142 508.1 489 60.7
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.4e-141 505.0 470 63.8
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 9.3e-140 501.1 478 62.8
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-137 493.8 477 62.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 7.4e-137 491.5 469 64.6
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.4e-137 491.5 483 56.1
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.8e-136 489.6 486 60.5
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 6.2e-136 488.4 467 57.4
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.4e-135 486.5 466 65.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.1e-135 486.1 484 55.6
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.0e-135 485.7 469 58.4
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.0e-134 483.4 468 62.8
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.4e-134 482.6 469 59.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.0e-133 481.1 495 56.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-133 480.3 481 57.6
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 4.9e-133 478.8 476 63.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 6.5e-133 478.4 475 56.8
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.4e-133 478.0 462 60.4
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.1e-132 477.6 401 69.3
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.1e-132 477.6 475 62.7
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-132 477.2 462 57.4
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.4e-132 477.2 493 61.5
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.4e-132 477.2 468 56.6
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.2e-132 476.1 464 64.7
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 9.3e-132 474.6 478 57.1
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-131 474.2 465 58.5
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 3.5e-131 472.6 486 61.5
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.5e-131 472.6 401 61.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.0e-131 471.9 465 63.7
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-130 469.9 476 59.7
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 3.0e-130 469.5 470 55.7
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.9e-130 469.2 482 62.4
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.9e-130 469.2 498 54.2
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 8.7e-130 468.0 466 54.5
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.7e-130 468.0 478 57.9
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.1e-129 467.6 479 61.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-129 466.8 479 60.3
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.3e-129 466.1 484 55.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.3e-129 466.1 481 52.4
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.3e-129 466.1 486 54.5
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.4e-129 464.9 478 57.9
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 7.4e-129 464.9 437 57.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 9.6e-129 464.5 482 55.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 9.6e-129 464.5 488 55.5
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.3e-128 464.2 484 55.4
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.6e-128 463.8 491 54.8
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.8e-128 463.0 491 55.0
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 3.7e-128 462.6 478 57.5
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.2e-128 461.8 391 67.3
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 8.2e-128 461.5 478 57.5
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.1e-127 461.1 483 55.7
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-127 460.3 479 55.9
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.0e-127 459.1 400 60.8
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 5.3e-127 458.8 479 57.8
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 9.0e-127 458.0 490 55.5
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.2e-126 457.6 465 54.2
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.2e-126 457.6 467 54.4
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.0e-125 454.5 474 52.7
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.3e-125 454.1 460 56.1
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.7e-125 453.8 484 56.8
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.8e-125 452.6 479 53.2
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-124 450.7 417 57.8
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.9e-124 450.3 479 53.0
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 2.5e-124 449.9 475 55.2
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 5.5e-124 448.7 397 59.9
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.2e-123 447.6 479 54.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.2e-123 447.6 479 53.4
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.7e-123 446.4 482 57.5
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.5e-123 446.0 471 52.9
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.3e-122 443.4 479 54.3
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.3e-122 443.4 477 57.9
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 5.1e-122 442.2 466 52.1
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.1e-121 441.0 478 54.0
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-121 440.7 474 53.0
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.9e-121 440.3 475 55.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.5e-121 439.9 471 53.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 2.5e-121 439.9 477 51.6
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 2.5e-121 439.9 495 52.7
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.3e-121 439.5 402 60.2
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 3.3e-121 439.5 469 58.0
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.2e-120 436.8 484 53.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.2e-120 436.8 483 54.2
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 2.2e-120 436.8 481 52.4
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 3.7e-120 436.0 479 54.9
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.8e-120 435.6 389 60.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.8e-120 435.6 466 49.6
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-119 434.1 493 52.7
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.9e-119 431.8 476 51.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.5e-118 430.6 488 54.5
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.0e-117 427.9 509 54.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.8e-117 426.0 467 52.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.4e-116 424.1 401 56.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 4.2e-116 422.5 473 50.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 4.2e-116 422.5 482 55.6
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.4e-116 421.4 388 62.6
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 7.9e-115 418.3 502 49.4
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 3.9e-114 416.0 509 48.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.7e-112 410.6 268 75.0
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.1e-108 397.9 314 64.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.9e-108 397.1 454 56.6
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 7.2e-108 395.2 395 54.4
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 9.4e-108 394.8 485 47.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.8e-106 390.6 394 56.1
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 3.9e-106 389.4 430 52.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 4.8e-104 382.5 385 52.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.5e-102 377.5 475 49.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.5e-102 375.9 387 58.9
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-99 367.5 479 54.5
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.1e-91 340.5 475 43.2
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.4e-89 332.8 386 49.2
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 5.5e-84 315.8 398 42.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.8e-82 308.9 320 51.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.2e-74 282.7 477 40.0
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.7e-69 267.7 371 48.8
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.8e-59 233.8 350 42.3
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 5.1e-53 213.0 192 57.8
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 6.6e-53 212.6 195 74.4
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.9e-49 198.7 319 46.7
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 8.6e-45 185.7 229 46.3
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 6.2e-43 179.5 451 29.5
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 6.0e-38 162.9 117 63.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.7e-32 144.8 99 68.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.3e-31 139.0 137 62.0
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.1e-28 132.1 147 45.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-28 131.7 99 69.7
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.6e-28 129.8 129 62.0
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 6.2e-27 126.3 275 30.9
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 7.6e-25 119.4 129 56.6
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 6.0e-22 109.8 145 45.5
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.3e-20 104.0 271 29.5
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 2.4e-18 97.8 142 41.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 5.8e-17 93.2 70 54.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 5.8e-17 93.2 147 38.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 5.8e-17 93.2 147 38.8
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-11 75.1 47 68.1
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 3.2e-07 60.8 110 40.9
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 6.1e-06 56.6 118 40.7


User provided reference genes

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