Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G35120 Arabidopsis thaliana HOM05D029252 ORTHO05D013753 3.9e-54 214.5 108 100.0
AT1G59930 Arabidopsis thaliana HOM05D029252 ORTHO05D013753 1.8e-46 189.1 107 86.0
AT1G59920 Arabidopsis thaliana HOM05D029252 ORTHO05D013753 5.1e-46 187.6 107 85.0
AL2G24250 Arabidopsis lyrata HOM05D000307 ORTHO05D000166 5.1e-38 161.0 107 74.8
AL2G29620 Arabidopsis lyrata HOM05D000307 ORTHO05D000166 1.2e-26 123.2 83 75.9
AT1G65300 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 3.8e-17 91.7 88 53.4
AT1G65330 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 5.0e-17 91.3 100 50.0
AL2G29630 Arabidopsis lyrata HOM05D029252 ORTHO05D013753 1.5e-13 79.7 56 66.1
Carub.0002s1700 Capsella rubella HOM05D000307 ORTHO05D000166 2.6e-13 79.0 107 45.8
AL1G49420 Arabidopsis lyrata HOM05D000307 ORTHO05D000166 4.4e-13 78.2 85 45.9
AT5G26650 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 5.7e-13 77.8 107 40.2
AT1G31630 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 9.7e-13 77.0 85 47.1
AT1G31640 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 1.7e-12 76.3 85 45.9
AT5G26580 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 4.8e-12 74.7 103 40.8
AT5G27960 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 4.8e-12 74.7 107 39.3
Carub.0006s2435 Capsella rubella HOM05D000307 ORTHO05D000166 2.4e-11 72.4 84 42.9
CARHR063470 Cardamine hirsuta HOM05D000307 ORTHO05D000166 3.1e-11 72.0 89 49.4
CARHR063550 Cardamine hirsuta HOM05D000307 ORTHO05D000166 4.1e-11 71.6 102 45.1
BcaNung03682 Brassica carinata HOM05D000307 ORTHO05D000166 1.6e-10 69.7 103 34.0
C07p41560 Brassica napus HOM05D000307 ORTHO05D000166 1.6e-10 69.7 103 34.0
BolC7t44688H Brassica oleracea HOM05D000307 ORTHO05D000166 1.6e-10 69.7 103 34.0
Carub.0006s2431 Capsella rubella HOM05D000307 ORTHO05D000166 1.6e-10 69.7 84 41.7
Carub.0006s2433 Capsella rubella HOM05D000307 ORTHO05D000166 1.6e-10 69.7 84 41.7
CARHR063490 Cardamine hirsuta HOM05D000307 ORTHO05D000166 3.5e-10 68.6 100 44.0
Aa31LG5G16270 Aethionema arabicum HOM05D000307 ORTHO05D000166 4.5e-10 68.2 99 37.4
CARHR063570 Cardamine hirsuta HOM05D000307 ORTHO05D000166 7.7e-10 67.4 100 44.0
AT5G26630 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 1.3e-09 66.6 89 37.1
BcaC04g21253 Brassica carinata HOM05D000307 ORTHO05D000166 1.3e-09 66.6 77 42.9
BcaNung03906 Brassica carinata HOM05D000307 ORTHO05D000166 1.3e-09 66.6 80 37.5
A09p26700 Brassica napus HOM05D000307 ORTHO05D000166 1.3e-09 66.6 77 42.9
C09p33810 Brassica napus HOM05D000307 ORTHO05D000166 1.3e-09 66.6 77 42.9
BolC9t56218H Brassica oleracea HOM05D000307 ORTHO05D000166 1.3e-09 66.6 77 42.9
BraA09t38241Z Brassica rapa HOM05D000307 ORTHO05D000166 1.3e-09 66.6 77 42.9
Sc17g0006780 Simmondsia chinensis HOM05D000307 ORTHO05D000166 1.7e-09 66.2 97 37.1
BraA06t26619Z Brassica rapa HOM05D000307 ORTHO05D000166 2.9e-09 65.5 82 36.6
BcaB01g01762 Brassica carinata HOM05D000307 ORTHO05D000166 3.8e-09 65.1 77 41.6
A06p36940 Brassica napus HOM05D000307 ORTHO05D000166 5.0e-09 64.7 82 36.6
CANSAT25G3868 Cannabis sativa HOM05D000307 ORTHO05D000166 6.5e-09 64.3 100 34.0
Potri.005G002400 Populus trichocarpa HOM05D000307 ORTHO05D000166 6.5e-09 64.3 81 43.2
Carub.0006s3483 Capsella rubella HOM05D000307 ORTHO05D000166 1.5e-08 63.2 113 36.3
Sp3g24480 Schrenkiella parvula HOM05D000307 ORTHO05D000166 1.5e-08 63.2 85 37.6
CANSAT25G0093 Cannabis sativa HOM05D000307 ORTHO05D000166 2.5e-08 62.4 100 35.0
CARHR102230 Cardamine hirsuta HOM05D000307 ORTHO05D000166 3.2e-08 62.0 77 41.6
Sp3g04750 Schrenkiella parvula HOM05D000307 ORTHO05D000166 3.2e-08 62.0 86 39.5
Sp6g04880 Schrenkiella parvula HOM05D000307 ORTHO05D000166 5.5e-08 61.2 77 39.0
EL10Ac4g09867 Beta vulgaris HOM05D000307 ORTHO05D000166 7.2e-08 60.8 78 41.0
A02p25430 Brassica napus HOM05D000307 ORTHO05D000166 7.2e-08 60.8 105 35.2
Sp2g21270 Schrenkiella parvula HOM05D000307 ORTHO05D000166 7.2e-08 60.8 76 38.2
BcaC03g17835 Brassica carinata HOM05D000073 ORTHO05D000166 9.4e-08 60.5 82 34.1
C02p40480 Brassica napus HOM05D000307 ORTHO05D000166 9.4e-08 60.5 105 35.2
C02p58660 Brassica napus HOM05D000307 ORTHO05D000166 9.4e-08 60.5 82 34.1
BolC2t11926H Brassica oleracea HOM05D000307 ORTHO05D000166 9.4e-08 60.5 82 34.1
BraA02t07531Z Brassica rapa HOM05D000307 ORTHO05D000166 9.4e-08 60.5 105 35.2
A02p39050 Brassica napus HOM05D000307 ORTHO05D000166 1.2e-07 60.1 82 34.1
BraA02t08874Z Brassica rapa HOM05D000307 ORTHO05D000166 1.6e-07 59.7 82 34.1
HanXRQChr02g0058811 Helianthus annuus HOM05D000307 ORTHO05D000166 1.6e-07 59.7 95 33.7
Peaxi162Scf00222g00046 Petunia axillaris HOM05D000307 ORTHO05D000166 2.1e-07 59.3 95 36.8
unitig_22.g6148 Utricularia gibba HOM05D000307 ORTHO05D000166 2.1e-07 59.3 115 33.0
CANSAT35G0001 Cannabis sativa HOM05D000307 ORTHO05D000166 2.7e-07 58.9 80 37.5
Thhalv10023873m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.7e-07 58.9 77 37.7
Lj6g0024616 Lotus japonicus HOM05D000307 ORTHO05D000166 2.7e-07 58.9 113 31.9
AT5G48670 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 3.6e-07 58.5 85 36.5
Carub.0003s0523 Capsella rubella HOM05D000307 ORTHO05D000166 3.6e-07 58.5 77 35.1
CDE05G1214 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 3.6e-07 58.5 107 33.6
Thhalv10012000m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 3.6e-07 58.5 77 37.7
CANSAT25G0806 Cannabis sativa HOM05D000307 ORTHO05D000166 4.7e-07 58.2 80 36.2
FAN02G2752 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.7e-07 58.2 96 38.5
FAN05G4635 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.7e-07 58.2 96 38.5
Thhalv10024119m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 6.1e-07 57.8 77 37.7
Peaxi162Scf00194g00005 Petunia axillaris HOM05D000307 ORTHO05D000166 6.1e-07 57.8 95 35.8
Carub.0006s2432 Capsella rubella HOM05D000307 ORTHO05D000166 8.0e-07 57.4 85 37.6
Ah.14g088630 Amaranthus hybridus HOM05D000307 ORTHO05D000166 1.0e-06 57.0 75 41.3
CANSAT80G0925 Cannabis sativa HOM05D000307 ORTHO05D000166 1.4e-06 56.6 75 37.3
CANSAT80G1707 Cannabis sativa HOM05D000307 ORTHO05D000166 1.4e-06 56.6 75 37.3
CARHR119540 Cardamine hirsuta HOM05D000307 ORTHO05D000166 1.4e-06 56.6 77 35.1
CARHR180810 Cardamine hirsuta HOM05D000307 ORTHO05D000166 1.4e-06 56.6 87 35.6
Dinv43549 Davidia involucrata HOM05D000307 ORTHO05D010256 1.4e-06 56.6 89 32.6
Dinv43556 Davidia involucrata HOM05D000307 ORTHO05D000166 1.4e-06 56.6 89 32.6
C05p61400 Brassica napus HOM05D000307 ORTHO05D000166 1.8e-06 56.2 88 37.5
BolC5t34798H Brassica oleracea HOM05D000307 ORTHO05D000166 1.8e-06 56.2 88 37.5
CANSAT54G0061 Cannabis sativa HOM05D000307 ORTHO05D000166 1.8e-06 56.2 80 35.0
Ca_17084_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.8e-06 56.2 107 32.7
FvH4_6g08460 Fragaria vesca HOM05D000307 ORTHO05D000166 1.8e-06 56.2 96 37.5
FAN14G3510 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.8e-06 56.2 96 37.5
Nitab4.5_0000001g0140 Nicotiana tabacum HOM05D000307 ORTHO05D000166 1.8e-06 56.2 82 37.8
Nitab4.5_0000009g0060 Nicotiana tabacum HOM05D000307 ORTHO05D000166 1.8e-06 56.2 82 37.8
Lalb_Chr02g0148031 Lupinus albus HOM05D000307 ORTHO05D000166 2.3e-06 55.8 116 33.6
Psat5g119400 Pisum sativum HOM05D000307 ORTHO05D000166 2.3e-06 55.8 108 33.3
CANSAT25G2689 Cannabis sativa HOM05D000307 ORTHO05D000166 3.0e-06 55.5 88 34.1
Carub.0006s2434 Capsella rubella HOM05D000307 ORTHO05D000166 3.0e-06 55.5 82 34.1
CDE11G0692 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 3.0e-06 55.5 93 33.3
Medtr3g065100 Medicago truncatula HOM05D000307 ORTHO05D000166 3.0e-06 55.5 78 35.9
Peaxi162Scf00222g00424 Petunia axillaris HOM05D000307 ORTHO05D000166 3.0e-06 55.5 81 38.3
TPR.G23204 Trifolium pratense HOM05D000307 ORTHO05D000166 3.0e-06 55.5 78 35.9
CANSAT80G0174 Cannabis sativa HOM05D000307 ORTHO05D000166 4.0e-06 55.1 84 36.9
CANSAT80G2856 Cannabis sativa HOM05D000307 ORTHO05D000166 4.0e-06 55.1 84 36.9
FAN09G0930 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.0e-06 55.1 96 37.5
HanXRQChr15g0479321 Helianthus annuus HOM05D000307 ORTHO05D000166 4.0e-06 55.1 92 32.6
Psat7g120000 Pisum sativum HOM05D000307 ORTHO05D000166 4.0e-06 55.1 78 37.2
BcaC05g30081 Brassica carinata HOM05D000307 ORTHO05D000166 5.2e-06 54.7 88 37.5
Carub.0001s2996 Capsella rubella HOM05D000307 ORTHO05D000166 5.2e-06 54.7 82 36.6
Carub.0194s0001 Capsella rubella HOM05D000307 ORTHO05D000166 5.2e-06 54.7 82 32.9
Ca_18733_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 5.2e-06 54.7 85 34.1
ECA246G5209 Erigeron canadensis HOM05D000307 ORTHO05D000166 5.2e-06 54.7 75 37.3
AT1G33070 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 6.7e-06 54.3 46 58.7
CARHR119080 Cardamine hirsuta HOM05D000307 ORTHO05D000166 6.7e-06 54.3 87 31.0
CDE05G0729 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 6.7e-06 54.3 106 33.0
HanXRQChr10g0296361 Helianthus annuus HOM05D000307 ORTHO05D000166 6.7e-06 54.3 76 34.2
Nn4g25289 Nelumbo nucifera HOM05D000307 ORTHO05D000166 6.7e-06 54.3 95 32.6
Nitab4.5_0001463g0160 Nicotiana tabacum HOM05D000307 ORTHO05D000166 6.7e-06 54.3 81 37.0
CANSAT25G3780 Cannabis sativa HOM05D000307 ORTHO05D000166 8.8e-06 53.9 81 37.0
HanXRQChr10g0296351 Helianthus annuus HOM05D000307 ORTHO05D000166 8.8e-06 53.9 92 33.7
Manes.09G181500 Manihot esculenta HOM05D000307 ORTHO05D000166 8.8e-06 53.9 83 34.9


User provided reference genes

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