Gene: AT1G65330
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G65330
- Transcript Identifier AT1G65330.1
- Gene Type Coding gene
- Location Chr1 : 24266481-24267320 : negative
Gene Family Information
- ID HOM05D000307
- #Genes/#Species 1483/93
- Phylogenetic origin
- ID ORTHO05D000166
- #Genes/#Species 1551/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G65330.1
- symbol PHE1
- Alias AGL37,AGAMOUS-like 37
- full_name PHERES1
- uniprot O80805
Descriptions
- Description MADS-box transcription factor family protein
- Computational description PHERES1 (PHE1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 38 (TAIR:AT1G65300.1); Has 3933 Blast hits to 3931 proteins in 449 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 84; Plants - 3665; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 1 |
| GO:0009793 | IMP | Gene Ontology | embryo development ending in seed dormancy | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G65300 |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000987 | IEA | GOA Database | cis-regulatory region sequence-specific DNA binding | |
| GO:0000987 | IEA | InterPro | cis-regulatory region sequence-specific DNA binding | |
| GO:0000981 | IEA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| GO:0000981 | IEA | InterPro | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS, ISM NAS | Gene Ontology | nucleus | 2 |
| GO:0090406 | IDA | Gene Ontology | pollen tube | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |