Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 9.0e-176 620.2 317 100.0
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 2.0e-159 565.8 317 90.2
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.2e-156 556.6 319 88.7
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 2.9e-142 508.8 320 82.2
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 1.9e-141 506.1 321 81.0
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 2.1e-140 502.7 321 80.4
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 2.1e-140 502.7 321 80.4
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 2.1e-140 502.7 321 82.2
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 4.4e-138 495.0 316 80.1
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.4e-136 490.0 346 74.9
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 4.1e-112 408.7 324 68.5
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 6.9e-99 364.8 330 62.4
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 6.2e-76 288.5 327 49.2
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 4.0e-75 285.8 331 50.8
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 3.8e-73 279.3 323 49.2
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 6.5e-73 278.5 325 49.8
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 2.5e-72 276.6 330 49.4
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 9.3e-72 274.6 334 47.3
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 9.3e-72 274.6 329 47.7
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 3.0e-70 269.6 378 42.3
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 5.1e-70 268.9 330 48.8
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.1e-70 268.9 319 48.6
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 8.7e-70 268.1 322 46.9
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.9e-69 266.9 320 47.5
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 2.5e-69 266.5 331 48.6
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 3.3e-69 266.2 319 47.3
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 5.7e-69 265.4 335 46.9
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 3.7e-68 262.7 321 49.8
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 3.7e-68 262.7 319 49.5
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.8e-67 260.4 317 47.9
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 5.3e-67 258.8 334 45.8
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.5e-66 257.3 317 47.6
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 1.5e-66 257.3 329 46.8
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.6e-66 256.5 330 45.5
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 3.4e-66 256.1 331 44.7
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 3.4e-66 256.1 335 45.1
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 5.9e-66 255.4 331 44.7
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 7.6e-66 255.0 353 45.0
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 7.6e-66 255.0 304 50.3
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.0e-65 254.6 318 45.3
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.3e-65 254.2 334 45.8
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 5.0e-65 252.3 336 45.2
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.9e-64 250.4 330 44.8
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 2.5e-64 250.0 314 48.1
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 7.2e-64 248.4 335 42.4
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 1.6e-63 247.3 330 43.9
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 2.1e-63 246.9 330 43.6
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 2.1e-63 246.9 335 45.1
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 4.6e-63 245.7 315 48.3
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 4.6e-63 245.7 327 47.1
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 6.1e-63 245.4 329 45.0
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 2.3e-62 243.4 328 46.3
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 2.3e-62 243.4 331 45.3
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 3.9e-62 242.7 323 44.6
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 6.7e-62 241.9 310 47.4
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 8.7e-62 241.5 356 41.3
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 1.1e-61 241.1 323 43.0
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.5e-61 240.7 331 44.1
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 2.5e-61 240.0 333 45.6
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.5e-61 240.0 353 42.8
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 3.3e-61 239.6 314 43.3
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.3e-60 237.7 332 46.4
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 4.8e-60 235.7 331 44.4
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.4e-59 234.2 285 47.4
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.4e-59 234.2 293 47.1
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 1.4e-59 234.2 313 44.1
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 2.4e-59 233.4 343 41.7
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 6.9e-59 231.9 326 42.3
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 6.9e-59 231.9 315 42.2
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.4e-58 229.6 331 45.3
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.3e-57 227.6 285 46.3
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 1.7e-57 227.3 320 44.7
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 1.7e-57 227.3 333 42.0
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 3.8e-57 226.1 315 44.1
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.5e-57 225.3 332 42.8
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 6.5e-57 225.3 224 52.7
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 1.9e-56 223.8 323 41.5
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 4.2e-56 222.6 268 45.5
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 5.5e-56 222.2 341 41.3
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 7.2e-56 221.9 333 42.3
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.2e-56 221.9 335 40.6
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.2e-56 221.9 333 42.3
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 7.9e-55 218.4 252 49.6
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 3.0e-54 216.5 332 40.7
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.1e-53 214.5 308 42.5
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.2e-52 210.3 216 53.2
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 8.2e-52 208.4 204 52.0
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.1e-51 208.0 328 39.6
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 7.7e-50 201.8 281 44.5
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 5.0e-49 199.1 288 44.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 5.0e-49 199.1 228 47.8
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 5.0e-49 199.1 261 41.4
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 1.9e-48 197.2 265 44.9
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 2.5e-48 196.8 304 41.4
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 3.2e-48 196.4 212 50.0
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.7e-47 193.4 209 49.3
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 4.7e-47 192.6 336 38.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 2.3e-46 190.3 319 38.6
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 3.0e-46 189.9 213 46.5
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 6.7e-46 188.7 262 43.1
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 3.3e-45 186.4 310 40.0
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 3.7e-44 183.0 196 48.0
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 8.2e-44 181.8 260 41.9
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 1.4e-43 181.0 223 43.5
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.4e-43 181.0 263 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 2.2e-41 173.7 198 48.0
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 8.5e-41 171.8 144 56.2
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 2.1e-39 167.2 203 45.3
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.3e-38 163.7 199 46.2
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 4.4e-37 159.5 202 44.1
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 2.2e-36 157.1 198 44.9
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.6e-34 151.0 198 44.4
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 2.0e-34 150.6 198 41.9
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.7e-34 148.7 198 43.9
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.7e-31 140.2 150 49.3
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.4e-29 132.9 142 52.1
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 7.5e-29 132.1 139 49.6
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.3e-25 121.3 123 50.4
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 1.3e-25 121.3 185 40.5
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 8.0e-23 112.1 194 42.8
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 5.2e-22 109.4 204 40.7
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 3.7e-20 103.2 207 37.2
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 3.6e-15 86.7 87 58.6
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 1.4e-14 84.7 201 32.3
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.2e-10 71.6 87 48.3


User provided reference genes

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