Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.8e-120 434.1 234 100.0
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.6e-116 421.4 234 96.6
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 7.8e-108 394.0 238 89.9
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.7e-97 358.2 242 83.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.4e-95 352.1 242 81.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.4e-95 352.1 242 81.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 8.4e-94 347.4 242 81.4
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.2e-93 345.5 242 79.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.2e-93 345.5 242 79.3
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.3e-91 339.3 209 86.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 3.0e-91 339.0 206 86.9
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 6.2e-89 331.3 242 77.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 6.2e-89 331.3 242 77.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 8.1e-89 330.9 242 77.7
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 8.1e-89 330.9 242 77.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 3.2e-85 318.9 236 73.3
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.8e-84 314.3 237 72.6
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.0e-83 313.9 237 72.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.9e-83 312.0 244 72.1
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 5.1e-83 311.6 238 71.4
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 6.6e-83 311.2 237 72.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-82 310.1 238 71.8
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.9e-82 309.7 210 77.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.5e-82 309.3 244 70.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 5.6e-82 308.1 241 71.8
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 9.6e-82 307.4 200 82.5
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 3.6e-81 305.4 243 71.2
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.6e-81 305.4 232 72.4
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 6.2e-81 304.7 201 81.6
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 8.1e-81 304.3 232 72.0
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.1e-80 303.9 201 80.1
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.4e-80 303.5 237 70.5
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.4e-80 302.8 225 74.2
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.4e-80 302.8 207 77.8
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.1e-80 302.4 237 70.5
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.1e-80 302.4 206 77.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.1e-80 302.4 206 79.1
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.0e-80 302.0 201 79.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.3e-80 301.6 206 79.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.3e-80 301.6 213 76.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 9.0e-80 300.8 243 68.7
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.2e-79 300.4 205 78.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.5e-79 300.1 200 80.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-79 300.1 233 70.4
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.5e-79 300.1 207 77.3
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.5e-79 300.1 214 74.8
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.0e-79 299.7 200 79.5
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.4e-79 298.9 200 79.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 4.5e-79 298.5 200 79.5
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.5e-79 298.5 233 71.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.5e-79 298.5 233 71.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.5e-79 298.5 244 68.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 5.8e-79 298.1 200 79.0
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 5.8e-79 298.1 201 78.1
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 7.6e-79 297.7 207 76.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.6e-79 297.7 233 71.2
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.6e-79 297.7 233 71.7
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 7.6e-79 297.7 201 78.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 9.9e-79 297.4 243 69.1
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.9e-79 297.4 207 76.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 9.9e-79 297.4 214 73.8
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.2e-78 296.2 200 79.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.8e-78 295.4 207 76.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 3.8e-78 295.4 201 77.6
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 6.4e-78 294.7 207 75.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 6.4e-78 294.7 218 72.5
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 6.4e-78 294.7 204 77.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-77 293.9 243 66.7
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-77 293.9 244 68.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.9e-77 293.1 200 78.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.2e-77 292.4 243 66.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.2e-77 292.4 202 77.7
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.2e-77 292.4 247 66.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 3.2e-77 292.4 242 69.0
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.2e-77 292.0 208 75.5
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 7.1e-77 291.2 203 76.8
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.6e-76 290.0 191 80.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.6e-76 290.0 206 75.7
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.1e-76 289.7 207 75.8
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.1e-76 289.7 241 67.2
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-76 289.3 244 66.8
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 3.5e-76 288.9 243 67.9
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.5e-76 288.9 213 72.3
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 6.0e-76 288.1 195 77.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.0e-75 287.3 237 67.1
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.0e-75 287.3 253 66.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.3e-75 287.0 195 77.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.3e-75 286.2 202 75.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.3e-75 286.2 200 75.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.3e-75 286.2 207 74.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.0e-75 285.8 206 74.8
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.9e-75 285.4 204 76.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.7e-75 284.6 191 79.1
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-74 283.5 202 75.2
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-74 283.5 202 75.2
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.5e-74 283.5 195 76.9
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-74 282.7 202 75.2
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 5.6e-74 281.6 241 65.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 7.4e-74 281.2 182 81.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 9.6e-74 280.8 213 71.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.3e-73 280.4 157 93.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.3e-73 280.4 193 77.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.3e-73 280.4 229 66.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.6e-73 280.0 208 71.6
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.1e-73 279.6 206 72.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.8e-73 279.3 207 72.0
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 3.6e-73 278.9 203 71.9
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.2e-73 278.1 209 71.3
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 8.1e-73 277.7 237 65.4
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 3.1e-72 275.8 206 71.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 9.0e-72 274.2 241 65.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 2.0e-71 273.1 200 73.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 9.9e-71 270.8 199 70.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.3e-70 270.4 210 70.5
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.9e-70 269.2 204 71.6
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.9e-70 268.5 177 80.2
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 6.4e-70 268.1 203 70.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.4e-69 266.9 239 63.6
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.5e-66 256.1 205 67.8
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 9.6e-66 254.2 212 65.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.7e-65 252.3 219 62.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.8e-65 251.9 201 66.7
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.8e-64 250.0 200 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.2e-63 247.3 201 66.2
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.4e-62 241.1 178 70.8
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.3e-61 237.7 225 58.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.5e-53 211.8 219 59.4
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.9e-50 203.4 191 60.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-49 200.7 165 68.5
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.7e-49 199.1 208 55.8
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.0e-42 176.8 128 72.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 7.7e-39 164.9 112 75.0
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.0e-38 164.5 228 49.1
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.7e-36 155.6 173 50.9
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 3.7e-33 146.0 170 48.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.1e-29 134.4 100 67.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 2.8e-25 119.8 86 67.4
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 4.8e-25 119.0 188 38.8
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 6.3e-25 118.6 104 60.6
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.7e-17 94.0 84 61.9
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-16 91.3 90 63.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 4.1e-16 89.4 205 30.7
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.4e-11 74.3 207 28.5
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.2e-11 72.4 46 76.1
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.7e-06 57.4 60 55.0
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.8e-06 56.2 51 58.8


User provided reference genes

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