Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 8.0e-100 367.1 183 100.0
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.0e-95 352.4 183 95.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 2.7e-92 342.0 183 91.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 90.7
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.7e-90 334.3 183 89.1
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 5.7e-90 334.3 183 89.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 89.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 88.5
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 88.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 88.5
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 88.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 88.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 88.5
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 88.0
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 88.0
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 88.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 86.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 85.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.6
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 6.1e-84 314.3 181 84.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 6.1e-84 314.3 181 84.0
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 83.6
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.0e-83 311.6 181 82.3
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 83.4
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 82.3
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 83.4
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.3
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 81.2
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 81.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 81.8
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 82.3
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 81.2
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 6.3e-81 304.3 181 81.8
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.7
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 81.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 82.9
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 80.3
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 82.9
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 81.2
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 81.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 80.7
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 80.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 80.7
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 80.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.1
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.7
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.2e-79 300.1 188 78.2
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 80.1
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 78.5
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 78.5
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.6
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.6
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.0
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 81.2
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 80.7
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 80.1
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 80.1
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 80.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 80.7
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 79.0
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 80.7
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 79.6
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.0
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 81.2
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 77.3
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 77.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 79.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 79.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 78.5
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 77.3
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.8e-78 295.0 181 77.9
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.8e-78 295.0 181 77.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 77.3
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 78.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.9e-77 292.7 181 79.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 79.0
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.9
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 76.2
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 77.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 7.3e-77 290.8 181 76.8
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 76.2
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 76.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 76.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 76.8
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.7e-76 288.1 181 76.8
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 4.7e-76 288.1 181 76.8
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 6.1e-76 287.7 181 76.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.0e-75 287.0 181 76.2
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.0e-75 287.0 181 76.2
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.4e-75 286.6 181 76.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 5.2e-75 284.6 181 75.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 6.8e-75 284.3 181 76.2
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.2e-74 283.5 181 75.1
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.0e-74 282.7 184 75.5
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 9.8e-74 280.4 186 73.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.7e-73 279.6 184 73.9
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 4.9e-73 278.1 181 72.9
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 8.3e-73 277.3 181 72.9
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.1e-72 276.9 180 75.6
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.4e-72 275.8 181 74.6
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 4.1e-72 275.0 184 73.9
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-71 273.5 184 71.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.0e-71 272.7 181 71.8
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.6e-70 267.7 187 72.2
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.1e-69 266.9 183 69.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.5e-69 266.5 226 61.5
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.5e-69 265.8 181 69.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.5e-69 265.8 181 70.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.6e-68 263.1 155 81.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.2e-68 261.2 182 69.8
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.1e-67 260.4 140 89.3
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.8e-67 259.6 217 62.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.5e-66 256.5 155 79.4
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.0e-66 256.1 181 70.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 7.5e-66 254.2 148 81.8
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 3.7e-65 251.9 181 65.2
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 6.0e-63 244.6 148 80.4
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 7.8e-63 244.2 181 68.0
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.7e-62 243.0 181 63.5
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.3e-61 238.8 181 66.9
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 1.1e-59 233.8 190 65.3
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 3.7e-57 225.3 181 64.6
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-56 223.4 158 70.9
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.2e-55 220.3 181 61.3
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.9e-53 213.0 136 72.8
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.7e-52 208.4 178 62.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.7e-52 208.4 155 67.7
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.8e-49 198.7 181 58.6
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 6.4e-49 198.0 158 65.8
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.4e-49 197.6 177 62.1
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 9.2e-48 194.1 148 64.2
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.7e-47 192.6 106 87.7
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.9e-45 186.4 148 64.2
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.6e-44 183.3 100 89.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.6e-44 183.3 186 48.4
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 100 83.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.9e-40 169.9 98 83.7
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.2e-40 169.1 97 82.5
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 7.1e-40 167.9 98 81.6
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 2.7e-39 166.0 99 80.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.5e-37 159.5 146 55.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 6.9e-35 151.4 134 59.0
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.4e-34 149.1 107 70.1
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 4.3e-29 132.1 81 77.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.1e-27 125.9 99 64.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 4.0e-27 125.6 76 77.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.2e-24 115.9 81 66.7
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.3e-22 110.5 106 58.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 3.7e-20 102.4 68 69.1
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 6.2e-20 101.7 189 40.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.1e-16 88.2 52 84.6
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.1e-15 86.7 106 48.1
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 2.4e-11 73.2 183 33.9
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 2.9e-09 66.2 81 48.1
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 9.4e-08 61.2 37 70.3


User provided reference genes

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