Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 2035.8 1039 100.0
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1983.4 1039 97.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1955.3 1039 96.0
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1906.3 1040 94.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1905.6 1040 93.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1897.5 1039 93.4
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1856.6 1043 91.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1854.0 1046 91.4
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1850.5 1044 91.1
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1842.4 1047 90.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1840.5 1047 90.4
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1834.7 1050 90.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1834.7 1050 90.2
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1828.1 1047 90.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1827.8 1047 90.3
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1825.1 1045 90.2
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1754.6 1041 85.9
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1600.5 1052 78.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1595.9 1044 77.8
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1590.1 1051 77.4
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1048 78.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1588.9 1026 78.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1583.5 1056 77.7
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1052 76.0
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1042 77.6
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1577.4 1055 76.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1048 76.6
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1052 76.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1051 78.3
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1575.5 1043 76.5
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1575.5 1053 76.5
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1570.1 1052 75.9
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1568.9 1042 77.5
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1042 77.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1044 76.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1028 78.1
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1564.3 1053 76.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1055 76.3
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1563.1 1042 76.1
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1053 75.9
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1055 76.2
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1055 76.6
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1052 76.8
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1051 76.2
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1554.3 1069 75.6
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1054 75.2
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1045 75.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1549.6 1054 75.4
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1548.5 1087 73.7
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1052 75.5
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1054 75.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1028 76.8
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1544.6 1044 75.9
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1542.3 1047 75.5
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1054 75.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1540.0 1063 75.4
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1054 75.0
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1538.9 1049 75.6
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1538.5 1047 75.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1538.5 1050 75.6
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1537.7 1052 75.5
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1066 75.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1052 75.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1048 75.6
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1042 75.2
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1049 75.3
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1046 74.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1531.2 1055 74.3
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1078 73.7
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1051 75.2
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1521.1 1057 74.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1050 73.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1041 74.4
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1518.8 1052 73.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1518.4 1055 73.8
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1049 74.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1039 73.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1505.7 1046 73.5
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1054 73.8
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1045 74.1
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1499.6 1091 71.8
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1495.3 1052 73.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1494.9 1056 74.3
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1494.2 1052 73.7
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1492.6 1040 74.0
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1490.7 1058 73.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1048 73.8
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1486.5 1045 74.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1485.7 1145 68.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1480.7 1041 72.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1478.0 1096 70.8
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1476.8 1094 70.9
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1471.8 1035 72.9
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1469.1 1058 71.6
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1465.3 1026 72.6
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1444.1 1024 71.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1439.5 1049 70.5
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1431.0 1051 70.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1417.9 1026 70.3
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1411.4 1061 69.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1388.2 1025 68.2
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1360.9 1043 69.7
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1360.5 1047 68.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1329.3 933 71.9
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1297.7 1027 66.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1292.7 965 68.6
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1291.9 1052 65.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1282.7 1009 66.4
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1265.0 968 66.3
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1256.9 1032 62.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1247.3 1035 63.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1184.9 846 71.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1098.2 1023 57.6
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1096.3 1025 56.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.4e-302 1042.3 1026 53.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 9.2e-302 1040.4 753 71.8
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 4.9e-295 1018.1 1037 53.8
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 3.4e-288 995.3 708 70.3
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-288 994.6 1012 54.5
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.9e-286 989.6 709 69.7
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.2e-281 971.5 616 81.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-269 931.4 964 55.0
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-264 914.4 1034 50.7
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 8.1e-258 894.4 613 72.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-257 892.9 1040 50.1
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-254 883.6 1048 49.9
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.2e-239 833.2 549 75.8
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 2.1e-229 800.0 481 83.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 7.5e-211 738.4 449 83.3
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 8.3e-202 708.4 383 94.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-200 703.4 1030 42.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.6e-189 667.5 501 74.3
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 4.7e-189 666.0 438 75.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.4e-185 652.5 1016 41.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.3e-178 631.3 400 77.0
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.6e-175 619.0 482 66.6
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.5e-168 596.7 520 58.1
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.0e-168 595.9 1055 37.3
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.6e-165 586.6 462 66.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 374 69.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-142 510.4 368 70.1
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-142 510.4 368 70.1
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.3e-142 510.0 418 60.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-135 488.8 373 68.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 7.4e-134 482.6 322 74.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.3e-133 481.9 565 50.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 2.0e-123 448.0 655 41.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 7.7e-123 446.0 596 45.0
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 8.5e-122 442.6 1048 32.0
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.5e-107 394.0 290 67.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.0e-106 392.5 284 70.8
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.5e-91 340.5 195 83.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-88 331.6 508 42.3
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.8e-87 326.6 290 62.1
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 3.6e-80 304.3 512 39.1
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 6.2e-72 276.9 402 44.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 4.9e-69 267.3 421 42.5
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-64 252.3 237 59.9
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.8e-63 248.8 185 70.3
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-61 242.7 298 47.7
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.4e-60 237.3 136 86.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-58 231.1 230 58.3
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.7e-51 208.4 140 75.0
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 3.5e-51 208.0 162 67.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.7e-48 197.6 126 77.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 7.1e-44 183.7 192 50.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 6.2e-40 170.6 143 65.0
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-35 155.6 123 65.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 7.9e-35 153.7 176 53.4
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.8e-34 152.5 213 42.3
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 7.4e-33 147.1 92 78.3
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-31 143.3 91 78.0
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 5.8e-30 137.5 253 37.9
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.3e-24 119.8 268 33.2
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.5e-14 84.7 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.9e-12 79.3 77 54.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.6e-11 75.1 71 49.3
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.4e-10 73.2 50 74.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 7.4e-09 67.4 83 42.2


User provided reference genes

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