Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 0.0e+00 1158.7 591 100.0
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.4e-307 1058.9 559 96.2
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.0e-306 1053.5 587 91.5
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 6.2e-303 1043.5 590 90.2
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.4e-299 1032.3 588 90.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 9.2e-299 1029.6 591 89.8
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.3e-297 1025.0 592 89.7
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.1e-296 1022.7 570 92.1
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.5e-296 1021.5 595 89.1
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.5e-296 1021.5 592 89.5
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.3e-296 1021.1 595 89.1
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 6.0e-274 947.2 597 81.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.4e-268 926.8 595 78.8
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.4e-262 909.4 591 78.0
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 4.3e-248 861.3 605 72.4
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.9e-243 845.9 600 70.3
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 7.2e-243 844.0 600 70.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 3.9e-241 838.2 606 69.1
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 6.7e-241 837.4 597 69.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 8.8e-241 837.0 604 68.7
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.6e-240 835.5 604 68.7
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.8e-238 829.3 597 68.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.3e-238 827.8 608 69.2
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.2e-237 826.6 603 69.0
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.2e-237 826.6 601 67.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.5e-237 826.2 598 68.7
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.0e-237 825.9 589 67.7
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 3.8e-236 821.6 601 68.2
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 6.5e-236 820.8 599 69.3
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.5e-235 819.7 591 68.5
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.5e-235 818.9 604 67.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.1e-234 815.8 595 68.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.8e-233 812.8 596 68.0
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.3e-233 812.4 603 66.8
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.3e-233 812.4 595 67.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 6.7e-233 810.8 596 68.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 6.7e-233 810.8 603 66.7
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.1e-232 810.1 598 68.2
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.1e-232 810.1 609 67.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.1e-232 810.1 619 66.2
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.4e-232 808.1 625 66.2
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.3e-231 806.6 601 67.7
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.7e-231 805.1 603 66.5
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.8e-230 802.7 596 66.8
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 4.1e-230 801.6 589 66.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 9.1e-230 800.4 589 66.9
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 2.0e-229 799.3 592 68.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.0e-229 799.3 578 68.5
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.0e-229 799.3 632 65.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.6e-229 798.9 589 66.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.2e-228 795.8 590 67.5
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.9e-228 795.4 590 66.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.5e-227 793.1 589 66.7
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.1e-226 789.3 602 66.8
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.5e-224 783.1 602 63.1
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.0e-224 782.7 596 64.9
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.4e-224 781.9 598 64.5
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 2.2e-223 779.2 587 65.4
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.7e-223 778.5 602 65.4
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.4e-222 776.5 598 65.4
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.4e-222 776.5 595 66.9
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.4e-222 776.5 604 65.2
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 5.4e-222 774.6 596 64.4
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 3.5e-221 771.9 596 64.4
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 4.5e-221 771.5 606 62.4
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 7.7e-221 770.8 591 65.0
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-220 769.6 596 64.6
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 2.2e-220 769.2 614 63.8
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.8e-220 768.5 595 64.0
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 3.8e-220 768.5 598 65.1
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 8.5e-220 767.3 593 64.8
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.1e-218 762.7 602 63.1
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.2e-216 756.9 601 62.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.6e-216 755.7 589 63.5
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.7e-215 751.9 579 65.6
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.1e-214 750.4 587 64.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 5.4e-214 748.0 585 64.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 3.5e-213 745.3 603 62.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 4.5e-213 745.0 601 62.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.9e-213 744.6 609 63.1
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 5.9e-213 744.6 603 62.7
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 7.7e-213 744.2 593 61.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 5.5e-211 738.0 598 62.5
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.0e-209 733.8 542 68.5
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.0e-209 733.8 592 62.3
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 6.8e-209 731.1 607 63.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.6e-208 729.2 587 61.7
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 2.6e-208 729.2 597 61.5
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 5.7e-208 728.0 603 61.0
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.4e-206 723.4 589 60.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 5.4e-206 721.5 597 62.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 5.4e-206 721.5 595 62.5
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 4.6e-205 718.4 590 61.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.3e-204 716.8 612 59.8
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.3e-204 716.1 606 61.6
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.9e-204 715.7 608 59.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.5e-203 712.6 606 61.1
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.6e-203 711.4 528 65.7
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.3e-203 711.1 593 62.4
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.1e-202 709.5 593 62.2
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.1e-202 709.5 593 62.2
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.8e-201 704.5 594 62.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.5e-200 703.4 593 61.9
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.5e-200 703.4 603 59.7
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 3.4e-200 702.2 595 61.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-199 699.9 595 61.5
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.4e-198 696.8 593 61.4
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.0e-197 693.0 597 59.8
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.7e-197 692.6 597 60.1
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.9e-191 672.5 576 58.3
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.7e-191 672.2 525 65.1
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.4e-190 669.5 585 59.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.9e-188 662.1 595 57.6
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.5e-187 659.4 587 57.9
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 6.8e-185 651.4 586 57.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 9.2e-182 641.0 596 55.9
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.1e-177 625.9 597 57.0
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.5e-176 623.6 595 54.8
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.2e-174 615.5 596 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.1e-169 600.9 624 52.9
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.8e-169 600.1 593 53.3
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 3.4e-168 595.9 594 51.9
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.5e-155 553.9 470 61.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-151 540.4 436 62.8
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.4e-150 537.3 596 48.5
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.5e-139 500.7 725 42.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 4.3e-131 472.6 394 64.7
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 5.1e-124 449.1 741 37.7
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 6.3e-122 442.2 455 48.4
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 4.1e-121 439.5 504 49.6
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.5e-119 432.2 317 70.0
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.5e-119 431.8 314 66.6
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 5.3e-113 412.5 598 42.0
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 7.2e-110 402.1 358 59.2
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.7e-101 373.6 354 58.8
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 3.5e-96 356.7 222 82.4
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 5.0e-87 326.2 603 36.5
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 6.8e-84 315.8 323 52.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.8e-76 291.2 489 38.4
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.1e-65 255.4 198 66.2
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.4e-65 255.0 183 69.4
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 6.4e-58 229.6 161 70.8
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.6e-54 215.7 136 69.1
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.9e-50 204.1 374 37.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 4.3e-46 190.3 119 73.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.7e-40 171.0 228 48.2
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.7e-40 171.0 113 69.9
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.5e-40 170.6 113 69.9
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.5e-38 164.5 120 64.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.9e-31 140.6 173 50.3
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.1e-31 140.2 125 60.8
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-29 134.8 94 68.1
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-29 134.8 94 68.1
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.2e-27 129.0 80 75.0
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 2.5e-25 121.3 79 72.2
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.7e-24 117.9 180 41.1
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 8.7e-23 112.8 82 65.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.0e-18 99.4 132 45.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.9e-17 95.1 121 49.6
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.0e-15 89.4 65 56.9
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.7e-13 80.9 56 58.9
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 4.8e-13 80.5 70 51.4
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 2.2e-10 71.6 151 37.7
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 6.7e-07 60.1 41 65.9
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.5e-06 58.9 35 80.0
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 3.3e-06 57.8 76 43.4
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 5.7e-06 57.0 99 37.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 5.7e-06 57.0 46 63.0


User provided reference genes

Program Settings