Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 2602.8 1320 100.0
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 2481.1 1320 95.2
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 2402.5 1320 92.4
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 2353.9 1320 89.9
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 2341.6 1320 89.6
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 2260.0 1325 87.4
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 2257.3 1324 87.6
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 2251.9 1324 86.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 2251.5 1324 86.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 2140.2 1321 83.9
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 2115.9 1350 79.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 2050.4 1157 89.8
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1964.1 1320 75.4
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1634.0 1333 63.2
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1629.0 1333 63.1
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1615.9 1326 62.7
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1611.3 1330 62.6
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1605.5 1330 62.3
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1602.0 1329 62.5
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1600.1 1330 62.0
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1595.5 1332 62.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1595.1 1330 62.0
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1593.9 1330 61.6
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1590.9 1327 61.9
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1590.1 1330 61.6
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1584.7 1330 61.1
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1582.8 1330 60.9
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1579.3 1330 60.9
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1578.5 1330 60.8
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1577.4 1330 60.8
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1576.2 1334 61.3
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1574.7 1332 60.8
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1332 60.7
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1335 61.0
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1563.1 1250 64.6
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1563.1 1328 60.5
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1552.0 1329 60.4
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1546.9 1337 60.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1540.8 1331 60.0
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1539.6 1324 59.7
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1537.7 1326 59.5
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1533.5 1327 59.5
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1529.6 1325 58.9
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1527.3 1324 59.4
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1523.8 1247 63.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1522.7 1283 61.8
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1519.2 1337 59.2
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1508.4 1338 58.6
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1507.7 1331 58.2
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1500.3 1328 58.6
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1499.2 1329 58.4
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1498.4 1247 61.2
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1494.2 1326 58.7
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1493.0 1329 58.8
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1491.9 1331 58.2
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1324 58.1
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1331 58.2
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1490.7 1323 59.0
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1488.8 1325 58.9
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1487.6 1343 57.3
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1486.1 1326 58.4
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1481.5 1334 57.8
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1481.5 1281 59.6
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1479.5 1349 57.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1477.2 1331 57.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1473.8 1324 58.1
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1471.4 1330 56.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1448.7 1333 57.2
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1448.0 1341 57.8
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1446.4 1336 56.3
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1442.9 1344 56.3
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1438.3 1321 57.7
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1437.9 1344 56.2
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1430.2 1281 58.4
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1428.7 1273 58.1
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1427.2 1244 59.7
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1426.0 1346 56.1
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1411.4 1327 56.4
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1394.4 1099 65.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1385.2 1325 55.8
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1383.2 1321 55.7
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1382.1 1196 58.5
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1381.7 1323 55.3
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1367.8 1323 54.9
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1359.0 1101 63.1
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1327.4 1279 56.5
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1310.8 1113 60.2
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1302.3 1134 59.3
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1289.2 1345 50.9
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1281.9 1349 50.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1266.5 1095 59.5
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1231.9 1353 49.9
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1221.5 1565 45.8
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1221.1 1340 49.4
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1218.0 1326 52.0
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1097.0 947 59.0
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1096.3 904 60.8
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 9.9e-309 1063.9 1262 47.1
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 1.1e-304 1050.4 1326 46.5
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 9.9e-293 1010.7 844 62.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.5e-272 943.7 758 64.5
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.2e-239 833.6 1373 37.3
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 1.2e-229 801.2 1192 39.9
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.1e-222 778.1 1294 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 2.3e-220 770.4 1158 39.6
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 8.3e-207 725.3 856 45.7
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 8.6e-204 715.3 806 49.6
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 2.7e-149 534.3 1513 30.7
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 6.7e-132 476.5 459 56.2
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.2e-125 455.7 359 66.6
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 1.1e-118 432.6 378 56.6
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 3.0e-95 354.8 1394 27.8
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.2e-77 296.2 315 50.5
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.0e-71 276.6 1534 24.3
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 1.6e-64 252.7 251 50.6
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 6.0e-64 250.8 1267 25.1
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.5e-62 246.1 197 66.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 7.1e-57 227.3 305 40.7
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 2.7e-48 198.7 1360 24.6
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.6e-48 198.0 168 64.3
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.7e-38 164.5 131 66.4
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-35 156.8 208 41.8
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.3e-34 153.3 121 66.9
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 5.0e-34 151.4 228 37.7
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 2.2e-29 136.0 176 47.7
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.4e-27 128.6 140 53.6


User provided reference genes

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