Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 5.4e-233 811.2 622 100.0
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 5.1e-199 698.4 604 92.4
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 2.8e-197 692.6 608 94.1
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 6.9e-188 661.4 623 88.1
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 3.2e-185 652.5 617 88.3
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-177 627.5 617 85.7
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.1e-177 627.5 622 87.1
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 8.8e-175 617.8 638 84.2
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-171 606.7 616 86.2
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 2.7e-171 606.3 629 75.0
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 5.0e-170 602.1 613 86.5
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 7.5e-166 588.2 613 83.5
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.2e-163 580.9 613 83.5
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.3e-162 577.4 638 80.1
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 1.5e-161 573.9 638 79.9
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 3.4e-158 562.8 644 78.7
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.4e-156 556.6 618 80.9
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.4e-156 556.6 630 82.1
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.0e-155 553.5 621 82.1
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.3e-135 486.9 662 75.2
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.8e-134 482.3 678 71.8
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 4.9e-133 479.2 680 72.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 6.0e-131 472.2 681 70.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 1.7e-130 470.7 669 73.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.2e-128 464.5 658 72.8
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.1e-128 463.8 678 63.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.8e-127 460.7 658 72.0
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 3.1e-127 459.9 664 72.0
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.0e-126 457.2 294 81.0
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.4e-126 456.4 653 74.0
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 5.8e-126 455.7 679 70.3
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.3e-125 454.5 680 52.4
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.9e-125 453.4 663 70.4
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 2.9e-125 453.4 665 71.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 4.9e-125 452.6 663 71.0
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 9.2e-124 448.4 644 72.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.6e-123 447.6 617 75.9
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 2.1e-123 447.2 687 59.5
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.0e-122 444.9 620 74.2
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.7e-122 444.1 648 71.0
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 2.3e-122 443.7 677 70.6
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 3.0e-122 443.4 655 70.7
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.6e-122 442.2 647 72.6
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 8.7e-122 441.8 646 72.3
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.1e-121 441.4 653 71.7
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-121 441.0 659 72.1
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.3e-121 439.5 651 71.3
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.6e-121 439.1 663 70.9
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 4.7e-120 436.0 647 71.3
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.1e-119 434.9 669 69.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.4e-119 434.5 658 69.9
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-119 433.7 652 71.3
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 9.0e-119 431.8 585 75.9
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.5e-118 431.0 641 70.8
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-118 431.0 545 63.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.3e-117 427.9 681 67.8
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.4e-116 424.5 677 69.4
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 1.9e-116 424.1 661 68.5
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.4e-116 423.7 614 74.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 3.5e-115 419.9 655 70.7
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.3e-114 417.9 643 72.5
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.7e-114 417.5 631 72.1
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 8.7e-114 415.2 661 69.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.1e-113 414.8 578 75.6
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.5e-113 414.5 644 70.3
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.5e-113 414.5 655 70.7
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-113 414.1 666 68.3
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.9e-113 414.1 636 72.5
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.5e-113 413.7 633 71.1
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 9.6e-113 411.8 637 72.5
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 8.1e-112 408.7 640 72.0
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.4e-111 407.9 677 68.1
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.5e-110 404.4 660 69.4
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.6e-110 403.7 630 70.8
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 7.6e-110 402.1 670 69.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 9.9e-110 401.7 545 76.1
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 3.8e-109 399.8 604 72.7
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 4.9e-109 399.4 628 71.2
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 6.4e-109 399.1 648 70.1
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 6.4e-109 399.1 603 72.8
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.2e-107 394.8 681 56.1
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.6e-107 394.4 749 53.4
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.5e-107 393.3 614 71.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 6.2e-104 382.5 615 72.0
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.8e-103 380.9 480 82.3
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 2.4e-103 380.6 664 52.0
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 9.0e-103 378.6 675 49.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.2e-102 378.3 530 66.4
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.6e-102 377.1 685 55.0
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 1.7e-101 374.4 497 68.4
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.4e-100 370.5 600 71.5
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 4.6e-99 366.3 622 69.1
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 7.4e-97 359.0 658 66.7
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.6e-97 358.6 659 66.6
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.4e-95 354.8 491 77.8
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.4e-95 354.0 637 42.2
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 6.9e-95 352.4 487 77.4
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.0e-94 350.9 646 67.0
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.7e-93 347.8 771 43.2
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 6.5e-93 345.9 717 43.8
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.5e-89 334.0 655 62.0
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 8.5e-85 318.9 796 42.0
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.4e-82 311.6 708 61.9
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 4.5e-78 296.6 380 75.5
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 7.7e-78 295.8 609 64.5
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.8e-74 284.6 466 75.5
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 4.1e-71 273.5 547 67.8
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.7e-69 268.1 461 74.8
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-69 266.9 448 76.1
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.5e-65 255.0 422 76.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.0e-62 244.6 463 70.8
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 7.7e-62 242.7 403 78.7
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 6.5e-61 239.6 148 80.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 2.5e-60 237.7 350 48.3
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-60 236.1 441 72.8
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.7e-59 233.4 393 80.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 8.0e-59 232.6 408 44.1
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 1.5e-57 228.4 334 46.7
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 9.7e-57 225.7 560 50.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-56 224.9 439 66.7
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 4.8e-56 223.4 154 74.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 4.2e-52 210.3 422 43.4
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.7e-51 207.6 343 44.0
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.0e-51 206.1 151 68.9
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 4.4e-49 200.3 215 56.7
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.7e-45 188.3 330 40.0
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 3.1e-39 167.5 118 69.5
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.5e-36 158.7 118 71.2
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.6e-35 155.2 412 58.5
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.4e-34 152.1 365 46.0
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.8e-34 151.8 379 31.4
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 7.5e-33 146.4 380 73.9
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 9.8e-33 146.0 383 73.6
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.3e-32 145.6 78 87.2
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 8.3e-32 142.9 79 84.8
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.0e-30 138.3 269 40.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.0e-30 138.3 129 52.7
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 4.3e-28 130.6 228 47.4
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-26 125.6 433 27.0
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-26 125.2 132 49.2
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-26 125.2 443 58.2
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.3e-26 124.8 129 45.7
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-26 124.8 131 47.3
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-25 122.1 138 47.1
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 2.6e-25 121.3 132 47.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 2.6e-25 121.3 132 47.0
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.9e-24 117.1 367 44.1
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.2e-23 114.4 88 58.0
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.5e-20 104.8 366 31.1
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.3e-20 104.4 75 61.3
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.6e-19 102.1 178 36.0
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 6.2e-19 100.1 56 89.3
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.1e-18 97.8 109 58.7
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 2.6e-17 94.7 225 39.1
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 3.4e-17 94.4 252 35.7
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.8e-17 93.6 53 69.8
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 7.5e-17 93.2 92 58.7
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-16 92.4 74 55.4
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.2e-16 91.7 76 65.8
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.2e-16 91.7 62 69.4
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.9e-16 91.3 77 63.6
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-14 85.5 47 89.4
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.6e-14 85.5 47 89.4
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 1.6e-14 85.5 185 42.2
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-13 81.3 54 61.1
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 5.1e-13 80.5 66 54.5
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 5.1e-13 80.5 51 80.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.6e-13 80.1 54 59.3
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 1.1e-12 79.3 60 68.3
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.9e-12 78.6 136 43.4
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.5e-12 78.2 166 44.0
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-11 75.5 80 60.0
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.1e-11 75.1 61 63.9
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.1e-11 75.1 61 63.9
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-10 72.8 80 58.8
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.1e-10 71.2 155 39.4
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 1.5e-09 68.9 39 84.6
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.1e-07 62.8 145 42.1
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.4e-07 60.5 38 60.5


User provided reference genes

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