Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 0.0e+00 1481.1 919 100.0
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 0.0e+00 1402.5 919 92.7
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 0.0e+00 1291.6 919 82.0
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 0.0e+00 1278.1 923 84.9
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 0.0e+00 1271.9 923 82.8
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 0.0e+00 1249.6 924 81.8
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 0.0e+00 1184.9 1084 74.2
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 0.0e+00 1119.8 925 72.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 0.0e+00 1097.8 830 78.4
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 0.0e+00 1085.1 957 71.6
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 0.0e+00 1077.0 950 72.1
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 0.0e+00 1077.0 947 72.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 6.3e-312 1073.9 948 71.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.2e-291 1005.7 920 64.8
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.5e-279 965.7 885 64.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 9.4e-258 894.0 929 56.6
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 8.2e-254 880.9 928 57.4
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.1e-253 880.6 934 57.4
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 7.7e-252 874.4 933 56.6
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.1e-249 866.3 934 57.0
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 5.7e-247 858.2 931 56.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.3e-243 846.3 923 56.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.0e-240 837.4 778 62.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.8e-240 836.6 938 55.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 3.1e-237 825.9 926 52.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-233 813.1 927 52.3
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-230 802.0 931 52.5
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.4e-229 799.7 927 51.8
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 9.2e-229 797.7 927 50.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-228 797.0 930 52.4
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.1e-226 790.8 927 52.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 3.3e-226 789.3 940 50.4
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.2e-225 785.0 926 51.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.8e-224 783.5 931 49.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-222 777.3 947 51.1
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.4e-221 773.9 928 49.9
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.0e-219 767.7 935 50.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 3.0e-219 766.1 929 50.5
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-218 763.8 928 49.8
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.2e-217 760.8 935 51.0
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.2e-217 760.8 944 50.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.2e-217 760.8 934 50.3
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.6e-217 760.4 939 50.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.1e-217 760.0 949 49.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-214 750.7 934 49.7
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.2e-214 750.0 934 49.8
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.1e-213 745.7 920 49.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 4.6e-212 742.3 937 50.2
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.5e-210 736.5 894 52.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.3e-210 736.1 928 49.4
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 4.3e-210 735.7 947 50.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.6e-209 733.8 921 48.5
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.6e-209 732.6 957 48.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.1e-208 729.6 971 48.2
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 2.6e-207 726.5 827 54.3
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.4e-207 726.1 637 64.8
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 5.4e-205 718.8 835 51.3
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 7.8e-204 714.9 941 48.0
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 8.6e-203 711.4 822 52.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.9e-202 710.3 941 47.6
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.6e-202 708.8 972 47.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.6e-201 706.1 936 47.5
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 4.0e-200 702.6 935 49.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.2e-200 702.2 931 47.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 4.4e-199 699.1 931 46.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 7.1e-197 691.8 677 58.6
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 7.1e-197 691.8 937 49.4
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 2.1e-196 690.3 935 47.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 7.8e-196 688.3 978 44.6
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.0e-195 686.4 543 67.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 9.6e-194 681.4 826 51.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.1e-193 680.2 834 52.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.8e-193 679.1 948 46.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 2.4e-192 676.8 837 49.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-191 674.5 950 47.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 4.5e-191 672.5 554 66.2
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.1e-189 667.9 474 74.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 5.4e-189 665.6 840 49.0
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 7.1e-189 665.2 564 63.8
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.5e-186 657.5 646 58.0
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.6e-186 655.6 815 48.7
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 9.6e-186 654.8 959 45.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.1e-184 651.4 673 55.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.9e-181 640.6 556 61.3
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.7e-180 636.7 850 47.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 4.6e-180 636.0 462 72.9
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 4.6e-180 636.0 839 48.0
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 5.1e-179 632.5 926 46.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.8e-176 624.0 361 85.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.6e-175 620.2 670 52.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.3e-174 617.8 421 72.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-173 614.0 494 64.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 3.2e-173 613.2 675 53.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.6e-172 609.4 470 68.1
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.8e-171 607.4 383 79.9
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 2.3e-171 607.1 699 51.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.9e-171 606.3 826 47.8
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.1e-170 604.7 470 67.7
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.9e-170 604.0 392 77.0
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 3.3e-170 603.2 554 60.3
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 5.7e-170 602.4 925 44.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.3e-169 601.3 672 53.3
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.6e-169 600.9 675 53.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.0e-166 591.7 501 63.9
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.2e-166 590.5 778 47.3
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 6.1e-164 582.4 361 79.2
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 8.8e-163 578.6 517 61.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.9e-162 577.4 675 52.0
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.5e-162 577.0 668 55.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 1.3e-161 574.7 408 73.8
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.8e-160 570.9 885 43.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-159 567.8 361 76.2
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 3.2e-157 560.1 666 51.7
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.2e-157 558.9 347 78.7
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.8e-155 554.3 646 53.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 5.2e-147 526.2 919 44.6
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 5.3e-144 516.2 410 64.4
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.2e-139 499.6 356 68.5
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.2e-138 498.4 348 70.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-135 488.4 413 63.0
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.0e-131 475.3 540 50.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.0e-131 473.4 737 44.5
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 2.2e-129 467.6 420 57.6
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 3.5e-127 460.3 304 74.0
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 5.9e-127 459.5 664 44.3
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-122 444.9 321 70.4
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.7e-122 443.0 427 53.6
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 9.8e-114 415.6 467 51.8
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.9e-113 414.1 531 47.3
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.4e-112 411.0 433 51.0
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.7e-111 407.5 280 72.1
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.3e-107 394.4 560 43.6
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.1e-107 394.0 769 42.8
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 6.4e-105 386.3 503 46.7
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.7e-102 378.3 500 46.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 6.6e-102 376.3 454 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 7.3e-101 372.9 440 48.6
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.7e-100 370.2 241 76.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 4.6e-87 327.0 351 50.4
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.1e-83 314.3 196 81.1
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.7e-73 282.0 317 45.4
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 4.9e-73 280.4 203 69.0
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.3e-69 267.7 184 70.1
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 7.4e-69 266.5 274 55.1
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.4e-59 235.7 323 39.6
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.4e-59 235.0 435 34.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.1e-59 234.6 303 50.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.1e-55 221.9 188 63.3
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.0e-54 219.5 185 61.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.8e-54 218.8 281 46.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.1e-53 216.1 154 68.8
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 7.4e-53 213.4 576 32.8
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 4.5e-50 204.1 573 33.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 8.8e-46 189.9 443 34.5
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.3e-45 188.0 324 36.4
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 6.3e-44 183.7 696 32.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-41 176.0 571 32.7
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.5e-41 173.7 292 46.6
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 7.2e-40 170.2 101 82.2
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 7.2e-40 170.2 153 58.8
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.2e-39 169.5 474 32.7
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 6.1e-39 167.2 565 30.6
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 2.6e-34 151.8 85 83.5
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.1e-31 140.6 460 30.2
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 5.5e-24 117.5 215 39.1
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.6e-23 115.9 63 87.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.8e-22 110.2 457 29.5
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.8e-22 110.2 128 53.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.8e-20 104.4 66 74.2
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 4.8e-20 104.4 64 78.1
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 7.0e-19 100.5 65 75.4
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.0e-17 96.7 58 75.9
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 9.4e-16 90.1 572 27.6
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.8e-14 85.9 415 26.3
BcaB08g37258 Brassica carinata HOM05D003684 ORTHO05D091863 2.0e-13 82.4 60 70.0
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.1e-11 75.1 39 92.3
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 9.1e-11 73.6 59 62.7
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 5.0e-09 67.8 52 63.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-08 65.1 47 68.1
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.2e-08 63.9 41 80.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 9.5e-08 63.5 322 34.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.0e-06 58.5 32 78.1
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 3.0e-06 58.5 161 24.8


User provided reference genes

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