Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 0.0e+00 1125.9 631 100.0
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 8.4e-290 1000.0 630 87.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.9e-257 892.5 561 83.2
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 5.0e-250 867.8 641 76.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.3e-242 843.2 630 78.6
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.3e-234 816.6 630 75.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 7.7e-227 790.8 563 76.6
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.2e-226 789.3 630 73.7
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 8.5e-226 787.3 554 75.3
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.2e-222 776.9 554 77.1
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 6.8e-191 671.4 569 67.1
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.7e-179 632.9 462 77.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 5.3e-167 592.0 544 58.3
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.3e-154 550.8 370 75.1
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.5e-129 466.8 571 51.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 5.7e-129 465.7 559 50.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.7e-128 463.0 558 50.9
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 6.3e-128 462.2 569 47.3
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 8.2e-128 461.8 561 51.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.3e-127 459.1 551 48.3
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.5e-125 452.2 555 48.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 5.5e-124 449.1 546 48.4
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.2e-123 448.0 551 47.2
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.6e-123 447.6 587 47.5
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.1e-123 447.2 553 45.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.1e-123 447.2 538 52.6
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.7e-123 446.8 551 45.4
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.7e-123 446.8 534 47.4
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 7.9e-123 445.3 569 44.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-122 442.6 541 45.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.7e-122 442.2 563 44.8
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-121 441.4 541 45.3
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.0e-121 440.7 570 48.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.6e-121 440.3 541 45.7
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 5.7e-121 439.1 558 49.3
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 7.4e-121 438.7 532 44.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.3e-120 438.0 603 42.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.3e-120 438.0 570 47.9
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.1e-119 434.9 571 43.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.4e-119 434.5 523 45.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.4e-119 433.7 548 44.2
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 7.0e-119 432.2 561 44.9
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.5e-118 431.0 564 43.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.6e-118 430.3 552 47.8
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.5e-118 429.9 554 46.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 4.5e-118 429.5 528 45.3
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 5.9e-118 429.1 540 44.8
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 5.5e-116 422.5 551 44.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 4.7e-115 419.5 555 47.7
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.0e-115 418.7 541 46.2
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 5.7e-113 412.5 548 45.3
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 5.7e-113 412.5 595 41.7
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.3e-112 411.4 541 44.7
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.7e-112 411.0 581 45.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 6.3e-112 409.1 565 40.9
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 7.0e-111 405.6 517 43.5
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.2e-110 404.8 553 48.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.5e-110 402.9 571 44.0
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.5e-108 397.9 540 44.8
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.5e-108 397.9 554 43.1
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.5e-108 397.9 542 47.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.5e-108 397.9 547 46.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.2e-108 396.4 518 41.9
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.8e-106 388.7 516 43.4
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 8.8e-106 388.7 525 43.2
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.8e-103 380.9 532 39.5
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 5.3e-103 379.4 545 45.7
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.5e-102 376.3 588 40.0
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.0e-101 372.9 588 42.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 4.2e-100 369.8 556 42.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-99 367.9 518 42.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.8e-98 364.4 355 54.4
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.0e-97 360.9 547 39.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.7e-96 357.8 571 39.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.2e-94 351.7 471 46.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.0e-94 350.9 547 40.4
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 8.0e-91 339.0 550 40.9
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.5e-89 334.7 411 52.1
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-85 321.6 554 35.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.2e-83 315.1 487 37.2
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.2e-83 315.1 370 50.0
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.8e-83 313.9 527 41.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 4.7e-83 313.2 389 51.9
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.4e-81 307.0 361 47.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.3e-80 305.1 361 47.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.2e-80 304.3 502 38.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 3.2e-79 300.4 496 39.5
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.0e-77 295.4 540 36.1
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 6.6e-77 292.7 524 38.4
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.1e-75 287.7 536 34.3
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.8e-74 284.6 516 33.7
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.0e-74 283.5 558 37.1
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-72 278.1 344 45.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.2e-70 271.9 467 38.8
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 7.3e-68 262.7 511 34.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.4e-63 248.4 510 34.5
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.6e-59 233.8 631 29.0
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 5.8e-57 226.5 248 50.8
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.0e-53 215.7 648 27.6
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 6.2e-51 206.5 316 39.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.1e-50 204.1 242 47.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 4.0e-50 203.8 349 34.4
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.4e-48 196.1 315 37.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.0e-45 189.1 258 41.5
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.9e-39 168.3 314 39.5
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 3.0e-37 161.0 145 55.2
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.5e-33 148.7 163 46.0
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.3e-32 145.6 113 57.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.7e-30 137.9 251 37.1
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 7.9e-30 136.3 117 51.3
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.0e-29 136.0 119 50.4
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.9e-29 134.0 127 52.0
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 2.5e-28 131.3 94 57.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 3.3e-28 131.0 125 47.2
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 9.6e-28 129.4 132 47.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 9.6e-28 129.4 125 48.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.1e-27 128.3 110 49.1
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.8e-27 127.1 100 57.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.5e-25 122.1 89 53.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.6e-25 121.3 116 49.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.3e-24 119.0 103 51.5
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.1e-22 111.7 198 40.9
C01p11360 Brassica napus HOM05D004644 ORTHO05D041344 3.5e-22 110.9 77 71.4
BolC1t01105H Brassica oleracea HOM05D004644 ORTHO05D041344 3.5e-22 110.9 77 71.4
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 7.9e-22 109.8 72 55.6
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.3e-21 109.0 115 43.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.9e-20 105.1 488 23.2
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 7.4e-20 103.2 107 46.7
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.8e-19 101.3 90 50.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-19 101.3 81 53.1
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 5.9e-17 93.6 94 50.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 7.7e-17 93.2 149 38.9
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.3e-16 92.4 79 55.7
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 6.5e-16 90.1 98 48.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.5e-16 90.1 86 38.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-13 82.8 105 39.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-13 82.4 106 41.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.8e-13 79.7 69 44.9
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 4.3e-12 77.4 47 57.4
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.3e-11 75.9 102 40.2
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-11 75.5 72 44.4
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 3.7e-11 74.3 87 41.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-11 74.3 72 43.1
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-11 74.3 72 43.1
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 4.8e-11 73.9 63 60.3
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 8.2e-11 73.2 64 46.9
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 9.1e-10 69.7 56 60.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-09 69.3 65 43.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.2e-08 65.1 59 55.9
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.8e-08 64.3 38 60.5
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.0e-08 63.9 57 49.1
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.5e-07 61.6 155 25.8
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 4.7e-06 57.4 47 48.9
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 7.9e-06 56.6 45 53.3


User provided reference genes

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