Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 2.8e-87 326.2 334 100.0
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.1e-83 314.3 334 91.3
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 6.4e-79 298.5 335 88.7
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 7.8e-77 291.6 333 87.4
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 5.2e-73 278.9 332 86.4
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 9.2e-70 268.1 331 84.6
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 4.9e-63 245.7 338 82.0
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 2.0e-56 223.8 332 80.7
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 2.0e-56 223.8 332 80.7
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.7e-55 220.7 327 80.4
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.1e-54 218.0 335 79.1
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 8.1e-50 201.8 328 53.0
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 9.3e-38 161.8 322 73.0
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 2.7e-37 160.2 333 61.9
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 3.5e-37 159.8 322 63.7
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 4.3e-35 152.9 325 70.5
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 4.3e-35 152.9 328 69.5
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 7.4e-35 152.1 321 70.1
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 1.3e-34 151.4 321 70.7
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 1.6e-34 151.0 321 67.3
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 2.8e-34 150.2 321 73.5
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 3.6e-34 149.8 324 72.5
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 6.2e-34 149.1 321 66.7
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 8.1e-34 148.7 320 72.8
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 8.1e-34 148.7 316 72.8
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 1.1e-33 148.3 321 73.5
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 1.1e-33 148.3 316 74.1
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 2.4e-33 147.1 320 73.8
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 3.1e-33 146.7 322 72.0
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 4.0e-33 146.4 325 68.0
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 6.9e-33 145.6 324 72.5
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 1.2e-32 144.8 331 71.3
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 2.0e-32 144.1 331 71.6
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 2.6e-32 143.7 322 65.2
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 5.8e-32 142.5 326 70.9
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 7.6e-32 142.1 329 70.2
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 7.6e-32 142.1 322 70.8
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 9.9e-32 141.7 326 69.9
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 1.3e-31 141.4 331 71.3
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 1.7e-31 141.0 326 69.6
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.7e-31 141.0 319 68.3
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 2.2e-31 140.6 321 72.9
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 2.2e-31 140.6 327 68.8
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 3.8e-31 139.8 324 70.4
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 3.8e-31 139.8 324 68.2
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 6.4e-31 139.0 325 69.2
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 8.4e-31 138.7 333 71.2
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 1.1e-30 138.3 321 70.1
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.4e-30 137.9 324 69.8
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.4e-30 137.9 324 69.8
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 1.4e-30 137.9 326 70.6
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 1.9e-30 137.5 321 71.7
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.2e-30 136.7 317 67.8
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 4.2e-30 136.3 333 70.9
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 4.2e-30 136.3 331 70.4
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 4.2e-30 136.3 325 69.8
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.2e-30 136.3 319 69.6
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 5.5e-30 136.0 326 69.9
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 5.5e-30 136.0 326 69.9
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 5.5e-30 136.0 327 69.4
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 1.6e-29 134.4 318 72.3
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 1.6e-29 134.4 327 70.6
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 1.6e-29 134.4 327 70.3
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 2.1e-29 134.0 324 67.3
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.1e-29 134.0 323 70.0
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.7e-29 133.7 320 69.4
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 1.0e-28 131.7 328 70.4
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 1.0e-28 131.7 327 70.0
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.0e-28 131.7 319 70.5
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.8e-28 131.0 324 69.1
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 3.0e-28 130.2 325 68.3
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 3.0e-28 130.2 332 68.7
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 5.1e-28 129.4 322 70.5
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 8.7e-28 128.6 331 68.0
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 8.7e-28 128.6 316 70.9
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.1e-27 128.3 321 70.1
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.9e-27 127.5 321 62.9
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 2.5e-27 127.1 365 57.5
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 3.3e-27 126.7 319 69.3
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 4.3e-27 126.3 321 69.8
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 4.3e-27 126.3 309 73.1
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 7.4e-27 125.6 313 72.5
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 9.6e-27 125.2 328 69.5
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 1.3e-26 124.8 328 64.9
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.6e-26 124.4 317 70.0
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.6e-26 124.4 330 69.4
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 1.1e-25 121.7 330 68.8
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.8e-25 120.9 321 68.8
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.8e-25 120.9 322 73.6
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 4.0e-25 119.8 325 62.2
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 4.0e-25 119.8 324 67.9
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.5e-24 117.9 322 73.0
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 3.4e-24 116.7 322 67.4
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 1.0e-23 115.2 324 65.4
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 3.8e-23 113.2 96 56.2
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 5.5e-22 109.4 87 60.9
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.2e-21 108.2 86 57.0
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 6.0e-21 105.9 317 42.9
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 2.3e-20 104.0 301 70.8
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 5.1e-20 102.8 88 55.7
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.5e-19 101.3 72 66.7
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 9.6e-19 98.6 76 57.9
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.7e-18 96.7 299 70.6
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 2.0e-16 90.9 314 47.8
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 1.3e-15 88.2 65 63.1
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.4e-14 84.7 70 52.9
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.9e-14 84.3 273 72.5
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 9.3e-14 82.0 57 66.7
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 2.7e-13 80.5 62 58.1
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 2.5e-11 73.9 55 60.0
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 6.3e-10 69.3 99 42.4
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 1.4e-09 68.2 75 46.7
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.5e-08 64.7 90 35.6
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.5e-08 64.7 58 53.4
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 2.2e-07 60.8 62 43.5
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.9e-07 60.5 62 45.2
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 5.0e-07 59.7 62 41.9
CBR_g26328 Chara braunii HOM05D002901 ORTHO05D003183 6.5e-07 59.3 92 28.3
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 6.5e-07 59.3 62 41.9
SMO353G0202 Selaginella moellendorffii HOM05D006835 ORTHO05D001299 6.5e-07 59.3 69 42.0
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 8.5e-07 58.9 62 40.3
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.1e-06 58.5 45 57.8
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 1.4e-06 58.2 59 37.3
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 1.9e-06 57.8 59 40.7
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 1.9e-06 57.8 59 39.0
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 1.9e-06 57.8 57 40.4
DCAR_018383 Daucus carota HOM05D002901 ORTHO05D003183 2.5e-06 57.4 98 28.6
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 3.2e-06 57.0 62 40.3
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 4.2e-06 56.6 67 38.8
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 4.2e-06 56.6 62 40.3
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 4.2e-06 56.6 62 40.3
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 43.1
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 4.2e-06 56.6 62 38.7
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 4.2e-06 56.6 56 39.3
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 4.2e-06 56.6 56 41.1
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 5.5e-06 56.2 59 39.0
Dinv41812 Davidia involucrata HOM05D002901 ORTHO05D003183 5.5e-06 56.2 59 35.6
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 5.5e-06 56.2 62 40.3
PSO170G5832 Papaver somniferum HOM05D002901 ORTHO05D003183 5.5e-06 56.2 64 34.4
PSO302G0303 Papaver somniferum HOM05D002901 ORTHO05D003183 5.5e-06 56.2 64 34.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 39.3
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 7.2e-06 55.8 57 40.4
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 7.2e-06 55.8 57 40.4
Nitab4.5_0005679g0020 Nicotiana tabacum HOM05D005956 ORTHO05D007197 7.2e-06 55.8 63 34.9
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 9.4e-06 55.5 59 40.7
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 9.4e-06 55.5 59 42.4


User provided reference genes

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