Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 5.3e-218 761.1 514 100.0
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.7e-203 713.0 514 92.0
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.6e-188 662.5 513 82.3
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 6.4e-171 604.7 442 78.7
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.2e-170 602.4 529 79.6
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 4.3e-159 565.5 512 75.4
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.4e-148 528.9 333 84.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.7e-145 519.6 442 71.9
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.7e-145 519.6 442 71.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.1e-138 497.7 437 73.7
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 8.7e-136 488.0 448 67.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-134 484.2 530 59.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.7e-134 482.6 424 71.0
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-132 477.6 435 65.1
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.2e-132 477.6 432 69.9
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 4.5e-132 475.7 424 70.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 5.8e-132 475.3 433 64.9
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-128 464.2 438 67.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.3e-128 464.2 438 67.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.8e-123 446.0 428 67.5
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.5e-123 445.3 424 66.7
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.2e-122 443.0 428 66.4
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 3.2e-122 443.0 443 58.9
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 4.2e-122 442.6 429 66.7
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 5.5e-122 442.2 441 69.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.2e-121 441.0 439 62.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 4.6e-121 439.1 426 61.7
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.0e-120 438.0 440 62.0
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.3e-120 436.8 438 59.8
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.9e-120 436.0 424 66.0
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.9e-119 433.7 324 72.2
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 7.4e-119 431.8 426 61.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 7.4e-119 431.8 438 65.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 7.4e-119 431.8 446 58.7
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.4e-117 427.6 429 62.5
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 6.9e-117 425.2 438 60.5
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.0e-117 424.9 429 59.9
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.2e-116 424.5 439 66.3
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.5e-116 424.1 425 61.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.6e-116 423.3 442 62.0
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.6e-116 423.3 443 59.8
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.4e-116 422.9 435 55.9
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.4e-116 422.9 327 70.0
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 5.9e-116 422.2 327 70.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 5.9e-116 422.2 438 61.2
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 7.7e-116 421.8 333 69.7
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 7.7e-116 421.8 424 64.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 7.7e-116 421.8 434 59.0
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.0e-115 421.4 334 69.5
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.2e-115 420.2 432 65.7
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.2e-115 420.2 411 67.4
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.9e-115 419.9 429 61.3
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.8e-115 419.5 444 58.8
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 8.5e-115 418.3 434 56.2
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.4e-114 417.5 434 56.2
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.5e-114 416.8 333 67.6
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 3.2e-114 416.4 434 58.8
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 2.1e-113 413.7 333 68.5
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 7.9e-113 411.8 439 60.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.0e-112 411.4 327 68.2
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.0e-112 411.4 333 67.6
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.3e-112 410.2 328 68.3
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 5.7e-111 405.6 427 60.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.2e-110 403.7 429 60.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 4.8e-110 402.5 482 51.2
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 6.3e-110 402.1 551 51.7
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.4e-109 401.0 437 57.2
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.1e-109 399.8 435 60.9
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.3e-109 399.1 329 66.9
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 9.1e-109 398.3 436 62.8
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.0e-108 397.1 317 67.8
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.0e-108 397.1 309 69.3
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.0e-108 397.1 322 67.1
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.9e-108 395.6 452 54.4
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.8e-107 392.9 433 61.4
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 5.0e-107 392.5 334 66.8
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 6.5e-107 392.1 441 60.8
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 6.5e-107 392.1 333 64.3
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 8.5e-107 391.7 433 61.2
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.5e-107 391.7 309 68.6
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 7.2e-106 388.7 442 59.5
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.6e-105 387.5 450 55.6
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.1e-105 385.6 434 60.8
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 9.7e-103 378.3 335 61.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.2e-102 377.1 434 56.5
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 4.8e-102 375.9 327 65.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 4.8e-102 375.9 396 63.9
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.8e-101 374.0 301 67.4
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.6e-100 370.2 297 69.7
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.0e-99 368.2 448 52.5
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.0e-99 365.9 288 69.8
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.5e-99 365.5 297 68.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 8.5e-99 365.2 284 70.4
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.1e-98 364.8 284 70.1
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 2.6e-95 353.6 295 66.8
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 3.3e-95 353.2 414 56.5
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 9.7e-95 351.7 333 60.1
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.3e-94 349.0 294 63.6
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-93 347.4 392 61.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.7e-91 340.9 284 68.0
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 2.9e-91 340.1 329 59.3
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.9e-90 337.4 365 52.9
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.7e-89 333.6 398 53.0
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 3.6e-89 333.2 592 41.2
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.2e-84 318.2 263 66.5
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.7e-83 314.3 241 69.3
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 3.0e-80 303.5 318 52.2
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 8.8e-80 302.0 319 52.7
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.4e-79 300.1 362 54.4
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 6.3e-78 295.8 365 55.3
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 7.0e-77 292.4 254 62.2
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.3e-72 277.3 289 58.8
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.9e-70 270.4 342 48.8
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 7.8e-68 262.3 331 45.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 8.9e-64 248.8 325 44.3
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.2e-57 228.4 401 42.9
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-54 217.6 233 54.5
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 6.4e-54 216.1 220 56.8
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.6e-52 209.9 203 53.7
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 3.0e-51 207.2 325 40.0
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 8.9e-48 195.7 304 42.4
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 8.1e-41 172.6 300 38.0
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 6.4e-38 162.9 126 69.0
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 2.6e-31 141.0 197 49.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.1e-25 121.3 156 50.0
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-24 119.0 156 49.4
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-24 119.0 156 49.4
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.0e-24 117.1 76 78.9
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.7e-14 85.1 84 54.8
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 4.2e-13 80.5 262 26.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 6.7e-11 73.2 63 60.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 6.7e-11 73.2 63 60.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 6.7e-11 73.2 63 60.3
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 6.3e-09 66.6 112 44.6
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 8.2e-09 66.2 303 25.4
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 2.6e-07 61.2 103 37.9
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 3.4e-07 60.8 64 56.2


User provided reference genes

Program Settings