Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 1.9e-267 925.2 459 100.0
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 4.6e-253 877.5 460 94.3
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 9.5e-243 843.2 458 91.0
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 1.3e-239 832.8 460 90.9
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.1e-227 793.1 460 86.7
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 5.2e-225 784.3 460 85.2
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 7.3e-219 763.8 461 84.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 9.6e-219 763.5 461 84.8
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 1.7e-215 752.7 462 81.6
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 1.4e-214 749.6 461 82.9
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 9.3e-214 746.9 461 83.1
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 1.8e-204 716.1 458 80.6
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 2.2e-186 656.0 459 72.5
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.1e-158 563.9 457 61.5
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 1.2e-157 560.5 457 59.7
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 4.7e-157 558.5 457 59.7
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 3.0e-156 555.8 457 59.5
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 5.7e-155 551.6 453 61.4
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 7.5e-155 551.2 451 62.3
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 1.7e-154 550.1 471 59.9
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 1.7e-154 550.1 461 60.1
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 2.2e-154 549.7 461 59.9
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 4.8e-154 548.5 467 60.0
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 6.3e-154 548.1 459 61.0
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 1.1e-153 547.4 468 58.5
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 4.1e-153 545.4 450 60.9
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 4.1e-153 545.4 458 61.1
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 7.0e-153 544.7 464 59.9
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 9.1e-153 544.3 457 59.5
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 5.9e-152 541.6 457 58.6
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 7.7e-152 541.2 457 57.8
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 1.7e-151 540.0 460 60.4
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 3.8e-151 538.9 462 61.0
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 5.0e-151 538.5 456 58.6
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.1e-150 537.3 460 58.7
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 1.5e-150 537.0 456 58.1
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.5e-150 536.2 460 58.7
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 5.5e-150 535.0 457 58.6
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 4.0e-148 528.9 449 60.4
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 4.0e-148 528.9 466 58.2
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 5.2e-148 528.5 476 58.0
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 8.8e-148 527.7 463 58.3
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.5e-147 526.9 463 58.3
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 5.7e-147 525.0 471 58.4
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 2.8e-146 522.7 447 57.9
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.7e-146 522.3 474 57.4
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 3.7e-146 522.3 463 57.9
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 6.3e-146 521.5 455 58.7
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 2.4e-145 519.6 471 57.5
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 5.4e-145 518.5 439 59.0
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 5.4e-145 518.5 469 57.8
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.7e-144 516.2 476 56.1
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 7.8e-144 514.6 476 56.1
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.3e-143 513.8 470 58.3
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 2.9e-143 512.7 460 57.2
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 1.1e-142 510.8 481 55.3
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 9.5e-142 507.7 465 56.8
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 2.8e-141 506.1 474 55.3
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 2.8e-141 506.1 558 48.4
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 1.4e-140 503.8 464 56.5
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.2e-140 501.9 464 56.0
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 6.8e-140 501.5 469 55.9
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 1.5e-139 500.4 473 55.0
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 2.6e-139 499.6 433 59.4
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 5.7e-139 498.4 464 56.5
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 9.8e-139 497.7 471 55.6
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 4.9e-138 495.4 490 52.7
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 4.9e-138 495.4 432 58.8
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 8.3e-138 494.6 503 52.9
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 1.1e-137 494.2 396 60.4
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 4.1e-137 492.3 516 52.1
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 7.0e-137 491.5 459 54.9
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 9.2e-137 491.1 459 56.4
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 1.6e-136 490.3 479 53.4
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 5.9e-136 488.4 477 54.7
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 7.8e-136 488.0 499 53.3
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 2.5e-134 483.0 446 57.2
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 9.5e-134 481.1 478 54.0
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 1.2e-133 480.7 465 55.5
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.8e-132 476.9 371 66.3
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 2.9e-130 469.5 468 53.6
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 1.4e-129 467.2 388 61.6
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 1.4e-129 467.2 476 51.9
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 5.6e-126 455.3 438 53.9
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 1.2e-123 447.6 447 53.9
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 3.4e-123 446.0 468 50.9
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 4.9e-122 442.2 468 49.4
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.9e-121 440.3 494 49.4
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.3e-119 434.1 377 58.9
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 1.5e-118 430.6 448 58.7
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 7.3e-118 428.3 337 64.7
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 3.0e-111 406.4 362 59.7
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 5.8e-107 392.1 464 48.3
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 1.7e-106 390.6 467 47.8
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 7.8e-104 381.7 450 48.0
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.7e-103 380.6 321 60.4
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 3.1e-100 369.8 349 55.6
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 3.1e-100 369.8 349 55.6
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 2.9e-98 363.2 421 47.5
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 7.4e-94 348.6 477 41.5
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 9.9e-91 338.2 289 57.8
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.1e-89 334.7 341 51.3
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 5.1e-87 325.9 463 41.5
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.8e-84 317.4 294 55.8
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 9.7e-78 295.0 348 44.3
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 1.2e-75 288.1 234 59.8
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 3.9e-71 273.1 230 58.3
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 1.4e-68 264.6 497 34.6
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 1.0e-66 258.5 454 39.0
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 8.5e-66 255.4 149 85.9
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 5.1e-63 246.1 349 41.8
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 6.7e-63 245.7 160 78.8
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 6.7e-63 245.7 160 78.8
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 8.8e-55 218.8 377 38.2
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 8.2e-53 212.2 298 40.3
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.5e-51 206.8 233 48.9
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 4.5e-51 206.5 174 60.9
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 6.7e-47 192.6 222 48.6
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 4.2e-41 173.3 168 54.2
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 6.8e-39 166.0 158 50.6
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.1e-36 158.7 147 55.1
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 5.4e-36 156.4 404 30.4
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 2.3e-34 151.0 172 48.8
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.8e-29 134.0 101 65.3
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.3e-23 114.4 116 51.7
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.5e-22 111.7 490 26.1
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-16 90.5 106 47.2
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 4.7e-16 90.1 105 43.8
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 3.2e-12 77.4 67 59.7
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 2.1e-11 74.7 91 47.3
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.0e-10 70.9 60 61.7
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.9e-10 70.5 60 61.7


User provided reference genes

Program Settings