Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 5.0e-229 797.3 387 100.0
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 9.2e-215 750.0 387 94.3
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 6.4e-208 727.2 387 91.2
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 6.2e-203 710.7 387 89.1
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 4.0e-202 708.0 387 88.4
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.0e-201 705.7 387 87.6
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 8.4e-200 700.3 389 87.9
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 3.1e-194 681.8 387 85.8
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 3.1e-194 681.8 387 85.8
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 9.9e-193 676.8 389 85.9
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 3.8e-152 542.0 378 71.7
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.2e-150 537.0 387 67.2
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 3.6e-150 535.4 389 66.3
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.0e-148 529.6 383 65.8
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 5.7e-148 528.1 387 66.7
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 9.1e-146 520.8 386 65.5
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.0e-145 519.6 385 64.4
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 4.5e-145 518.5 387 63.3
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 7.7e-145 517.7 388 64.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.0e-144 517.3 388 66.2
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 6.5e-144 514.6 404 62.9
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.1e-143 513.8 388 64.4
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 3.2e-143 512.3 384 64.8
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 7.2e-143 511.1 389 64.8
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 8.0e-142 507.7 387 62.0
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 8.0e-142 507.7 403 61.5
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-139 500.4 387 63.8
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.3e-139 500.4 404 60.1
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.7e-139 500.0 394 62.7
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.2e-139 499.6 385 62.6
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 4.8e-139 498.4 454 56.6
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.4e-138 496.1 394 62.2
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 9.1e-138 494.2 386 60.1
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 9.1e-138 494.2 384 60.9
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.6e-137 493.4 389 63.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.6e-137 493.4 394 62.4
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.0e-137 493.0 385 61.6
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.5e-137 492.3 385 60.5
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 7.7e-137 491.1 376 62.8
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.0e-136 490.7 387 61.2
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.0e-136 490.7 387 61.2
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 2.9e-136 489.2 384 60.9
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.5e-135 486.9 386 61.9
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.5e-135 486.9 384 60.9
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.5e-135 486.1 390 62.6
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 2.5e-135 486.1 387 60.7
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 3.3e-135 485.7 409 57.7
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 7.2e-135 484.6 387 60.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 9.5e-135 484.2 384 63.0
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 9.5e-135 484.2 393 60.6
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 9.5e-135 484.2 473 52.9
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.2e-134 483.8 390 61.0
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.8e-134 482.6 393 60.8
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.8e-133 479.9 382 59.2
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 4.0e-133 478.8 383 58.5
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 4.0e-133 478.8 382 59.7
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 2.0e-132 476.5 390 59.7
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.6e-132 476.1 406 56.9
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 3.4e-132 475.7 390 59.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 8.3e-131 471.1 382 59.9
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 8.3e-131 471.1 385 60.3
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.1e-130 470.7 382 60.2
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.4e-130 470.3 424 56.8
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 9.2e-130 467.6 387 58.4
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.2e-129 467.2 422 56.6
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.7e-129 466.1 411 58.4
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 5.9e-129 464.9 382 57.9
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.7e-128 463.4 497 50.3
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 4.3e-127 458.8 383 60.1
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 5.6e-127 458.4 356 61.0
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 9.5e-127 457.6 352 64.8
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.8e-125 453.4 371 59.3
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 9.8e-124 447.6 371 59.0
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.2e-123 446.4 401 54.4
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.7e-120 436.8 382 55.2
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 2.3e-120 436.4 387 56.8
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.5e-119 433.7 384 57.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 3.3e-119 432.6 385 54.5
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 4.0e-117 425.6 382 53.9
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.5e-116 423.7 383 54.3
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 2.6e-116 422.9 386 54.9
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.0e-112 411.0 381 54.1
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 4.3e-111 405.6 381 57.2
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.6e-108 396.4 298 69.1
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 7.5e-108 394.8 501 45.9
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.3e-107 394.0 374 52.7
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 1.3e-107 394.0 305 63.0
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 9.9e-92 341.3 331 51.1
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 3.8e-91 339.3 385 43.9
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.6e-89 334.0 216 73.1
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.9e-87 327.0 390 47.4
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.8e-86 322.4 277 58.1
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.5e-84 317.4 392 43.1
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.1e-77 294.7 214 63.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 1.6e-73 280.8 381 40.4
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.6e-73 280.8 167 75.4
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.6e-68 263.5 410 43.2
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 4.2e-66 256.1 376 42.0
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 5.5e-66 255.8 240 53.8
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 6.0e-65 252.3 167 67.7
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.5e-63 247.7 238 52.9
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 8.2e-62 241.9 148 71.6
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 9.4e-58 228.4 561 29.2
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 3.9e-56 223.0 140 70.7
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.5e-55 221.1 382 37.7
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-54 218.0 253 48.6
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 3.6e-49 199.9 156 62.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.0e-48 196.8 130 68.5
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 8.8e-48 195.3 99 91.9
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.5e-47 194.5 382 36.1
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.7e-46 189.9 119 73.9
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 4.1e-45 186.4 233 42.1
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.0e-44 184.1 114 73.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 7.7e-44 182.2 153 58.2
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 3.0e-40 170.2 272 37.5
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 1.3e-38 164.9 443 28.2
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.7e-38 163.3 241 40.2
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.9e-34 151.0 177 49.2
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 4.5e-28 129.8 79 70.9
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.1e-26 125.2 173 41.0
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.2e-26 123.6 397 29.7
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 3.6e-25 120.2 456 25.4
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.2e-23 115.2 222 35.1
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.2e-23 115.2 222 35.1
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 8.3e-22 109.0 420 27.1
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 3.3e-18 97.1 53 81.1
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 8.9e-16 89.0 97 48.5
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.6e-15 87.4 51 72.5
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 8.3e-14 82.4 103 47.6
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.1e-13 80.1 59 57.6
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 1.5e-10 71.6 358 24.3
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.0e-08 65.5 305 21.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 1.4e-08 65.1 52 59.6
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 3.1e-08 63.9 293 26.3
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 8.9e-08 62.4 356 24.2
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.2e-07 62.0 374 21.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.2e-07 62.0 158 27.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-07 62.0 390 22.3
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.0e-07 61.2 371 21.0
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.6e-07 60.8 52 51.9
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 4.4e-07 60.1 298 23.5
PSO210G7221 Papaver somniferum HOM05D003006 ORTHO05D003438 7.5e-07 59.3 188 29.3
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.3e-06 58.5 301 20.9
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.3e-06 58.5 301 20.9
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-06 58.2 179 21.8
PSO210G6896 Papaver somniferum HOM05D003006 ORTHO05D003438 1.7e-06 58.2 188 28.7
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 2.2e-06 57.8 307 21.2
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 2.9e-06 57.4 295 23.4
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 2.9e-06 57.4 144 24.3
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 2.9e-06 57.4 49 59.2
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 8.3e-06 55.8 392 21.2
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 8.3e-06 55.8 74 37.8
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 8.3e-06 55.8 317 22.1
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.3e-06 55.8 211 24.6
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 8.3e-06 55.8 74 36.5


User provided reference genes

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