Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 0.0e+00 1157.5 563 100.0
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 0.0e+00 1123.2 563 97.5
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 0.0e+00 1102.8 565 95.2
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 0.0e+00 1088.2 565 94.0
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 0.0e+00 1087.0 566 94.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 4.7e-308 1060.4 566 90.3
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 5.1e-307 1057.0 566 90.6
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 8.8e-307 1056.2 566 90.5
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 2.0e-306 1055.0 566 90.5
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.7e-305 1052.0 566 90.1
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.7e-305 1052.0 566 90.3
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.3e-290 1001.1 559 86.9
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.1e-288 994.2 566 86.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.7e-286 988.8 566 83.4
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.6e-284 982.2 553 85.0
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.1e-284 981.9 566 83.6
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.1e-280 969.5 556 83.6
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.7e-279 964.9 567 82.9
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.5e-279 964.5 556 83.5
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 3.5e-279 964.5 559 83.5
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.7e-273 944.5 563 81.9
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 8.3e-273 943.3 563 81.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 8.3e-273 943.3 563 81.9
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 8.3e-273 943.3 563 81.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.1e-272 943.0 563 81.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.5e-271 937.6 558 78.7
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.0e-270 936.4 556 79.5
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.7e-270 935.6 559 78.7
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 5.6e-269 930.6 561 77.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 8.0e-268 926.8 556 78.4
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.8e-267 925.6 556 78.2
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.8e-267 925.6 561 77.9
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 3.0e-267 924.9 555 77.8
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 4.0e-267 924.5 561 77.9
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.2e-267 924.1 561 77.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.6e-266 921.8 568 78.9
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 4.4e-266 921.0 556 77.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.8e-266 920.6 557 77.2
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 7.5e-266 920.2 534 80.1
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.3e-265 919.5 552 79.0
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.7e-265 919.1 556 77.7
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.9e-265 918.3 549 78.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.4e-265 917.1 534 80.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 9.2e-264 913.3 561 75.8
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.7e-263 911.8 546 78.8
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.3e-262 908.7 531 80.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.9e-262 907.9 559 77.1
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 5.0e-262 907.5 559 77.1
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 8.6e-262 906.7 518 84.7
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-261 905.2 535 79.6
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 7.3e-261 903.7 550 76.0
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 7.3e-261 903.7 558 75.6
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.0e-260 900.2 556 76.4
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 8.0e-260 900.2 549 77.0
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.1e-259 899.8 549 77.0
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.4e-259 899.4 544 80.5
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 6.8e-259 897.1 550 77.3
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 5.8e-258 894.0 548 76.1
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.8e-258 893.3 531 78.7
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 9.8e-258 893.3 562 74.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.7e-257 892.5 562 75.1
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.2e-257 892.1 556 75.7
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 4.9e-257 891.0 556 76.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.4e-256 889.4 523 79.9
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.4e-256 888.6 545 76.7
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.1e-256 887.9 561 75.6
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 2.7e-255 885.2 559 74.4
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 4.6e-255 884.4 590 71.5
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 7.8e-255 883.6 546 75.6
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.0e-254 883.2 545 76.3
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.7e-254 882.5 556 74.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.3e-254 882.1 517 79.3
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.3e-254 882.1 557 74.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 3.0e-254 881.7 550 74.7
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 8.6e-254 880.2 578 72.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 8.6e-254 880.2 557 74.5
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.5e-253 878.6 549 74.3
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.2e-252 876.3 557 73.8
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.1e-252 875.5 555 75.0
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.1e-252 875.5 559 73.3
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 2.1e-252 875.5 561 73.3
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 2.8e-252 875.2 563 74.1
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.7e-252 874.4 555 75.0
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 6.2e-252 874.0 594 69.9
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.1e-251 871.7 545 74.9
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 5.2e-251 870.9 561 73.3
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 6.8e-251 870.5 557 74.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.0e-250 869.0 543 75.1
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.6e-250 868.6 561 73.1
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.3e-249 866.3 545 74.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.9e-248 862.4 549 74.0
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 2.4e-248 862.1 575 71.1
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.2e-247 859.8 563 71.9
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.1e-247 859.0 533 75.2
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 4.6e-247 857.8 563 71.9
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 6.0e-247 857.4 547 72.2
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.0e-246 856.7 550 71.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.3e-246 855.5 547 74.0
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 5.1e-246 854.4 533 75.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 6.6e-246 854.0 578 71.5
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.5e-245 852.0 559 71.2
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.1e-243 846.7 531 75.5
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.1e-243 845.1 536 75.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.2e-241 839.0 559 71.4
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 4.9e-241 837.8 557 70.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 6.4e-241 837.4 581 70.4
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.9e-240 835.9 565 71.2
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-239 833.2 549 72.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.1e-239 832.4 542 72.7
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.3e-237 825.1 507 77.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 5.6e-237 824.3 545 72.8
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.0e-235 817.0 517 76.4
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.7e-233 812.8 562 69.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.0e-230 803.5 520 72.9
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.3e-228 796.6 495 76.2
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.8e-219 766.1 514 69.8
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.6e-218 762.3 529 70.3
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.9e-217 758.8 498 73.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 2.5e-216 755.7 533 68.9
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.0e-214 750.4 571 65.1
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 6.7e-214 747.7 565 65.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 2.1e-207 726.1 556 63.8
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.1e-206 721.5 531 67.0
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.9e-200 703.0 478 71.5
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.7e-196 688.7 567 62.6
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.1e-195 685.3 581 60.4
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.8e-193 678.7 561 61.1
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.2e-188 662.9 575 59.8
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 6.3e-188 661.4 416 76.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.7e-140 503.8 330 74.2
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.8e-134 483.8 278 80.6
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.3e-129 467.6 263 85.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.4e-125 452.6 310 69.7
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.9e-123 447.2 349 63.6
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.5e-120 436.8 518 50.0
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.3e-120 436.4 334 65.9
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-113 414.5 294 68.4
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.0e-100 371.7 217 79.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.3e-96 356.7 217 71.0
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 3.1e-94 350.1 296 60.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.1e-86 325.1 285 58.9
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-81 307.0 252 65.1
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 4.1e-78 296.6 580 33.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 7.7e-77 292.4 198 72.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.2e-71 272.3 201 67.7
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 5.3e-62 243.0 424 33.0
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.2e-59 233.8 145 70.3
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 5.2e-57 226.5 228 50.0
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 7.2e-43 179.5 116 70.7
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.0e-32 144.8 128 54.7
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 2.4e-30 137.9 112 57.1
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.7e-28 131.7 102 56.9
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.6e-26 124.0 100 57.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.1e-25 120.9 106 52.8
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.7e-23 115.2 81 61.7
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 3.5e-21 107.5 102 56.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.1e-18 98.2 54 72.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.3e-17 94.7 56 75.0
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 2.5e-11 74.7 62 51.6
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.1e-10 71.6 43 72.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.7e-07 62.0 73 37.0
VMungo1215G2860 Vigna mungo HOM05D000459 ORTHO05D000038 1.4e-06 58.9 56 39.3
Os12g0113700 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 2.4e-06 58.2 76 38.2
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 4.2e-06 57.4 75 34.7
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.2e-06 57.4 55 38.2
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-06 57.0 51 39.2
BcaB07g33366 Brassica carinata HOM05D000157 ORTHO05D001065 7.1e-06 56.6 74 31.1
Gohir.A09G015300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.1e-06 56.6 51 39.2
Gohir.D09G013700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.1e-06 56.6 51 39.2
Gohir.D09G013800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.1e-06 56.6 51 39.2
Gorai.006G015900 Gossypium raimondii HOM05D000082 ORTHO05D000038 7.1e-06 56.6 51 39.2
COL.COLO4_36026 Corchorus olitorius HOM05D000082 ORTHO05D000038 9.3e-06 56.2 55 38.2
TPR.G30532 Trifolium pratense HOM05D000341 ORTHO05D001197 9.3e-06 56.2 56 39.3


User provided reference genes

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